Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E13
         (149 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    64   2e-11
U11280-3|AAM97952.1|  403|Caenorhabditis elegans Hypothetical pr...    30   0.26 
U11280-2|AAK77637.1|  452|Caenorhabditis elegans Hypothetical pr...    30   0.26 
U11280-1|AAA19436.1|  450|Caenorhabditis elegans Hypothetical pr...    30   0.26 
AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical ...    25   9.6  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 28/42 (66%), Positives = 35/42 (83%)
 Frame = +1

Query: 22  VPREIXDIKDFLLTARMKDAKSVKIKKNPENVEFKVRCSRFL 147
           +P+EI +IKDFL+ AR KDAKSVKIKKN  N +FKVRC+ +L
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYL 42


>U11280-3|AAM97952.1|  403|Caenorhabditis elegans Hypothetical
           protein T17E9.2c protein.
          Length = 403

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 10  HTSSVPREIXDIKDFLLTARMKDAKSVKIKKNPE 111
           H S  PR++ D++   L+A+M  A+++K+ K PE
Sbjct: 204 HRSLNPRKLIDVRFSHLSAKMTMARTIKLYKLPE 237


>U11280-2|AAK77637.1|  452|Caenorhabditis elegans Hypothetical
           protein T17E9.2b protein.
          Length = 452

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 10  HTSSVPREIXDIKDFLLTARMKDAKSVKIKKNPE 111
           H S  PR++ D++   L+A+M  A+++K+ K PE
Sbjct: 253 HRSLNPRKLIDVRFSHLSAKMTMARTIKLYKLPE 286


>U11280-1|AAA19436.1|  450|Caenorhabditis elegans Hypothetical
           protein T17E9.2a protein.
          Length = 450

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 10  HTSSVPREIXDIKDFLLTARMKDAKSVKIKKNPE 111
           H S  PR++ D++   L+A+M  A+++K+ K PE
Sbjct: 251 HRSLNPRKLIDVRFSHLSAKMTMARTIKLYKLPE 284


>AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical
           protein Y87G2A.6 protein.
          Length = 629

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 7   LHTSSVPREIXDIKDFLLTARMKDAKSVKIKKNPENVEF 123
           +H  ++   I    DF++TA +        KK+ E VEF
Sbjct: 52  MHRDTISHVIATKTDFIITASVDGHLKFWKKKHSEGVEF 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,905
Number of Sequences: 27780
Number of extensions: 32941
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 12,740,198
effective HSP length: 30
effective length of database: 11,906,798
effective search space used: 226229162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)