Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E12
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    28   0.36 
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    28   0.36 
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   1.1  
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    26   1.4  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    25   3.3  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   3.3  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.3  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    24   4.4  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    24   4.4  

>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 27.9 bits (59), Expect = 0.36
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 66  QFKHVELYKIGHGKNRVPNAPK-SSISEIFSPETTEGSPV 182
           Q K  E Y+I +GK+R  N P+ +S S++ S  +    PV
Sbjct: 471 QKKGYENYRISYGKDRCGNPPRTNSKSDVLSVSSDMSMPV 510


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 27.9 bits (59), Expect = 0.36
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 297 RLSSGKQSCSRSVQRVWNAYRAGVSECRELRVDEAYHSSQ 178
           +L  GK  C R  QR   +  A    CR   +D ++HS +
Sbjct: 294 KLEEGKSVCLRLYQRNNGSILAFPRSCRSFALDGSFHSDE 333


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 306 GWCRLSSGKQSCSRSVQRVWNAYRAGVS-ECRELRVDEAYHSS 181
           GW    S K+S S+S+  V N Y  GVS    +    E YH S
Sbjct: 250 GWDHTVS-KESMSQSIAEVLNPYNKGVSRSLNDATNMETYHWS 291


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 6   RLECRNPSCFFFSITMATYAQFKHVELYKIGHG 104
           RL   NP+C        ++  F  ++LY+I HG
Sbjct: 95  RLYTTNPACPDLISAFLSFRGFHALQLYRIAHG 127


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 176 PCEEWYASSTRSSRHSDTPARYAFQTL--WTDREQLCFPD 289
           PC +   S T S+++SD P++++ + +  W+  ++  F D
Sbjct: 468 PCYKLAESWTNSAKNSDDPSKFSSKDIENWSAGQKSLFLD 507


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 11  RVSKPFVFFFLNNNGHLCPIQTCRALQDRSRKESGAKRAEK*YQ 142
           +VS P +FF+LNN   + P    + L ++   E      E  Y+
Sbjct: 625 KVSCPIMFFYLNNWYSVKPSSFTKGLNNKPSLEDVFSNLETCYE 668


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 81  ELYKIGHGKNRVPNAPKSSISEIFSPETTEGSPVKNG 191
           E+ K  H  +  P+ P    +   +P   EG+ +KNG
Sbjct: 272 EISKFNHQHSGKPDHPSLVSNASLAPFIVEGNGIKNG 308


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 140 DTTFRRVWHPILSVTDLVKLDMFELGIGGHC 48
           D  ++R  H IL + + V  D+F     GHC
Sbjct: 308 DIIYKR--HTILQIIEYVPYDLFTFITKGHC 336


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 150 RSR*YYFSARLAPDSFRDRSCKARHV*IGHRWPLLLRKKNTKGFDT 13
           +S  Y  + +  PD+  D++ + + V I   + +L   K  K FDT
Sbjct: 103 KSAYYKLAKQYHPDANPDKAAQDKFVEIKQAYEVLQDPKKKKAFDT 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,230,478
Number of Sequences: 5004
Number of extensions: 21657
Number of successful extensions: 55
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)