Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E12
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0065 - 11073816-11074384,11074605-11075160 31 0.14
10_08_0394 + 17535525-17535656,17537205-17538371,17540558-17541448 30 0.41
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 28 1.7
04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019 27 2.9
03_01_0242 - 1873066-1873232,1874127-1874186,1874286-1874359,187... 27 3.8
07_03_0631 + 20104332-20106802,20106904-20107030,20107352-201074... 26 5.1
02_04_0363 + 22369461-22370127,22370240-22370310,22370412-223709... 26 5.1
09_04_0268 - 16253312-16253358,16253618-16253789,16253881-162543... 26 6.7
06_03_1248 + 28685911-28687719 26 6.7
01_01_0455 - 3379727-3381058 26 6.7
08_02_0829 - 21604845-21605588 25 8.9
06_03_0887 + 25688726-25689616,25689759-25690406 25 8.9
06_01_0730 + 5370575-5370761,5371395-5371438,5372057-5372204,537... 25 8.9
04_03_1031 + 21850857-21851009,21852229-21852350,21852447-218528... 25 8.9
>06_02_0065 - 11073816-11074384,11074605-11075160
Length = 374
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 149 DLADTTFRRVWHPILSVTDLVKLDMFELG 63
DL D TF V H ++S +D +LD+ ELG
Sbjct: 293 DLQDETFGLVLHDVVSPSDETRLDLVELG 321
>10_08_0394 + 17535525-17535656,17537205-17538371,17540558-17541448
Length = 729
Score = 29.9 bits (64), Expect = 0.41
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -1
Query: 264 SVQRVWNAYRAGVSECRELRV--DEAYHSSQGCLLLSPG*RSR*YYFS 127
S R+W V E E+R + +H+ G ++ P RSR YYF+
Sbjct: 54 SGDRIWGLEMKEVGEVEEVRCLDPQLWHACAGGMVQMPAPRSRVYYFA 101
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = +2
Query: 137 YQRDLQPGDNRRQPCEEWYASSTRSSRH-----SDTPARYAFQTLWTDREQLCFPDDNRH 301
+Q DL G + E +SRH S +P R +T+ E LC D++R
Sbjct: 919 FQEDLPDGAKYSEDAEFLANPRVDNSRHDVQLQSSSPCREELETVKAPCENLCALDESRE 978
Query: 302 H 304
H
Sbjct: 979 H 979
>04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019
Length = 486
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 75 HVELYKIGHGKNRVPNAPKSSISEIFSPETTEGSP 179
HV L+ GH VP AP++S S + TT+ SP
Sbjct: 453 HVALFAAGHAP--VPVAPEASPSTTTTGTTTDRSP 485
>03_01_0242 -
1873066-1873232,1874127-1874186,1874286-1874359,
1875098-1875264,1875487-1875581,1875873-1875897,
1875988-1876083,1876204-1876263,1876388-1876585,
1877354-1877626
Length = 404
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +3
Query: 18 RNPSCFFFSITMATYAQFKHVELYKIGH-----GKNRVPNAPKSSISEIFSPETTEGSPV 182
R+P+C +S + + V+ Y+I H G+ + A +S ISE+F+ + + +
Sbjct: 162 RDPACAQYSWALLYLKGYHSVQSYRIAHVLWNQGRKVLALALQSRISEVFAVDIHPAARI 221
Query: 183 KNG 191
G
Sbjct: 222 GEG 224
>07_03_0631 + 20104332-20106802,20106904-20107030,20107352-20107479,
20108771-20109083
Length = 1012
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 26 FVFFFLNNNGHLCPIQTCRALQDRSRKESGAKRAEK*YQRDLQPGDNRRQPCEEWYASST 205
F+F ++ HL + + R++ +RA + Q ++QP EE SS
Sbjct: 890 FIFTPTSSGPHLTHPKEANKAKSGVREKCAFRRASGEHHSPGQRDGPQKQPAEERRGSSP 949
Query: 206 RSSRH 220
S RH
Sbjct: 950 ASPRH 954
>02_04_0363 +
22369461-22370127,22370240-22370310,22370412-22370978,
22371056-22371301
Length = 516
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 161 DNRRQPCEEWYASSTRSSRHSDTPARYAFQ 250
DN R+ +EWYA + ++ + PA A Q
Sbjct: 480 DNVRRCLQEWYALAEHQAQDEEDPAAAAAQ 509
>09_04_0268 -
16253312-16253358,16253618-16253789,16253881-16254359,
16255723-16255801,16255918-16255923
Length = 260
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 288 SGKQSCSRSVQRVWNAYRAGVSECRE 211
SGKQ +R YRA VS+CR+
Sbjct: 12 SGKQEANRFPANSSAPYRANVSDCRK 37
>06_03_1248 + 28685911-28687719
Length = 602
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +2
Query: 155 PGDNRRQPCEEWYASSTRSSRHSDTPARYAFQ-TLWTDREQL 277
PG R QP EE + T + +PA A Q T R QL
Sbjct: 211 PGPTRAQPTEEHHQQPTEAPPAEPSPAAAAVQEEAVTSRAQL 252
>01_01_0455 - 3379727-3381058
Length = 443
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 146 LADTTFRRVWHPILSVTDLVKLDM 75
LAD +FRRV P S+ DLV + +
Sbjct: 242 LADESFRRVPQPPFSMVDLVPVHL 265
>08_02_0829 - 21604845-21605588
Length = 247
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/56 (25%), Positives = 17/56 (30%)
Frame = +2
Query: 62 CPIQTCRALQDRSRKESGAKRAEK*YQRDLQPGDNRRQPCEEWYASSTRSSRHSDT 229
C C K++G A + R CE W A T S S T
Sbjct: 87 CRADACERWDANKNKKAGGSAASSSTSKASGGNPGRADSCERWDAHKTPGSPASST 142
>06_03_0887 + 25688726-25689616,25689759-25690406
Length = 512
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -2
Query: 239 IARACRSVANYAWTRRTILHRAAFCCLRAEDLADTTFRRV 120
+A R+VA A RT+ RAA C L +AD+T R V
Sbjct: 159 VAATLRAVAAAAADGRTVELRAALCAL----VADSTVRAV 194
>06_01_0730 +
5370575-5370761,5371395-5371438,5372057-5372204,
5372289-5372397,5373349-5373863,5374571-5374808,
5375296-5375560,5375740-5375844,5375950-5376015,
5376562-5377020,5377267-5377464,5378149-5378211
Length = 798
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 155 PGDNRR--QPCEEWYASSTRSSRHSDT 229
P N++ QP +EW ST+ S + DT
Sbjct: 329 PASNQKVTQPAKEWKPKSTKKSSNIDT 355
>04_03_1031 +
21850857-21851009,21852229-21852350,21852447-21852891,
21852981-21853087,21853192-21854524,21854632-21854859,
21854951-21855181,21855278-21855537,21855651-21856113
Length = 1113
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 65 PIQTCRALQDRSRKESGAKRAEK*YQRDLQPGDNRRQPCEEWYASSTRSSRHS 223
P + R L + SR GA + + + L+ + RRQ EW + R S
Sbjct: 15 PPRIRRRLLEGSRVGGGAPTSAEEIEAKLKEAELRRQQFHEWVSCKARKKPRS 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,261,534
Number of Sequences: 37544
Number of extensions: 147684
Number of successful extensions: 420
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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