Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E12
(306 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 29 0.64
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 29 0.64
Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical pr... 27 3.4
U49829-6|AAA93387.1| 498|Caenorhabditis elegans Hypothetical pr... 27 3.4
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 27 3.4
Z66520-7|CAA91384.1| 286|Caenorhabditis elegans Hypothetical pr... 26 4.5
AC025721-9|AAK29904.3| 639|Caenorhabditis elegans Hypothetical ... 26 6.0
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z54271-3|CAA91039.1| 713|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 25 7.9
M77697-9|AAA27904.1| 407|Caenorhabditis elegans Hypothetical pr... 25 7.9
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 12 ECRNPSCFFFSITMATYAQFKHVELYKIGHGKNRVPNAPKSSISEIFSPETTEGSP 179
E +NP F SIT +A +K + +Y G+ P P++ + E +P
Sbjct: 60 EAKNPKFNFLSITDPYHAYYKKM-VYDFSEGRVEAPKVPQAVKEHVKKAEFVPSAP 114
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 12 ECRNPSCFFFSITMATYAQFKHVELYKIGHGKNRVPNAPKSSISEIFSPETTEGSP 179
E +NP F SIT +A +K + +Y G+ P P++ + E +P
Sbjct: 60 EAKNPKFNFLSITDPYHAYYKKM-VYDFSEGRVEAPKVPQAVKEHVKKAEFVPSAP 114
>Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical
protein ZK675.2 protein.
Length = 1027
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 30 CFFFSITMATYAQFKHVELYKIGHGKNRVPNAPKSSISEIFS-PETTEGSPVKNG 191
CFF S+ + KH E+ I H K + N S+SE+ S VKNG
Sbjct: 447 CFFVSVAVRNRIDLKHKEV-AITHSKGTISN----SMSEVASCSYAARDCGVKNG 496
>U49829-6|AAA93387.1| 498|Caenorhabditis elegans Hypothetical
protein F27D9.2 protein.
Length = 498
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 30 CFFFSITMATYAQFKHVELYKIGHGKNRVPNAP--KSSISEIFSPE 161
C ++T + VE Y I HGKN V + + I ++ SP+
Sbjct: 219 CLILNVTGLLIVKLAFVEKYIINHGKNIVQDEENGEKKIKKLASPD 264
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 78 VELYKIGHGKNRVPNAPKSSISEIFSPETTEGSPVKN 188
V+ I G + P AP+ S E+ PE E KN
Sbjct: 532 VDAAPIEEGSDAAPEAPEPSPLELLDPELREDEDPKN 568
>Z66520-7|CAA91384.1| 286|Caenorhabditis elegans Hypothetical
protein F49E12.10 protein.
Length = 286
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 57 TYAQFKHVELYKIGHGKNRVPNAPKSSISEIFS 155
T+ F H +LYK H K+ NAP SIS I++
Sbjct: 128 THRLFHHPKLYKHIHKKHHEWNAP-VSISSIYA 159
>AC025721-9|AAK29904.3| 639|Caenorhabditis elegans Hypothetical
protein Y48G8AL.5 protein.
Length = 639
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 206 RSSRHSDTPARYAFQTLWTDREQLCFPDDNR 298
R++ D P + FQ DREQL +NR
Sbjct: 64 RAALQRDLPVSFRFQGCHKDREQLIHEMENR 94
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 72 KHVELY-KIGHGKNRVPNAPKSSISEIFSPETT 167
+H+ L K HG + +P SS S+IF PE T
Sbjct: 488 RHLSLKSKPPHGHHMERGSPGSSKSDIFHPEPT 520
>Z54271-3|CAA91039.1| 713|Caenorhabditis elegans Hypothetical
protein F21D5.3 protein.
Length = 713
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -2
Query: 140 DTTFRRVWHPILSVTDLVKLDMFELGIGG 54
DTT R +H + ++V++ ++ +G+GG
Sbjct: 511 DTTCRCFYHLEHKLNNIVQITLYNMGLGG 539
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 72 KHVELY-KIGHGKNRVPNAPKSSISEIFSPETT 167
+H+ L K HG + +P SS S+IF PE T
Sbjct: 488 RHLSLKSKPPHGHHMERGSPGSSKSDIFHPEPT 520
>M77697-9|AAA27904.1| 407|Caenorhabditis elegans Hypothetical
protein B0303.14 protein.
Length = 407
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 167 CCLRAEDLADTTFRRVWHPILSVTD 93
C + DL DT R++W ++VTD
Sbjct: 329 CAVGLSDLCDTAQRQLWVNWMTVTD 353
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,972,856
Number of Sequences: 27780
Number of extensions: 126316
Number of successful extensions: 326
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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