Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E12
         (306 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   2.0  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    20   7.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   7.9  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 184 FTGLPSVVSGLKISL 140
           + GLP+V+SGL  SL
Sbjct: 424 YNGLPTVMSGLDESL 438


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 167 RRQPCEEWYASSTRSSRH 220
           R +PC +   S TR  RH
Sbjct: 4   RCEPCNKILTSLTRLRRH 21


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = +2

Query: 185 EWYASSTRSSRHSDTPARYAFQT 253
           +W+  ST     + TPA +   T
Sbjct: 615 QWHTRSTEKRVSAGTPAAFNIST 637


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,360
Number of Sequences: 438
Number of extensions: 1250
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)