Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E11
(325 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 86 1e-18
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 28 0.40
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 0.53
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 0.53
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 26 1.2
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 1.2
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 26 1.6
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 25 2.1
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 2.8
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 2.8
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 25 3.7
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 24 4.9
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 24 4.9
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 24 4.9
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 24 6.5
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 24 6.5
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos... 24 6.5
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 23 8.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 23 8.6
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 23 8.6
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 86.2 bits (204), Expect = 1e-18
Identities = 39/73 (53%), Positives = 52/73 (71%)
Frame = +3
Query: 105 DGEEALSEEVLRMPTDEIISRTRLLDNEIKIMKSEVMRIAHEHQAQNDKIKENTEKIKVN 284
+G + + +E+L DE+ SRTRLL+N+IK+MKSE R+ HE +KIKEN EKI N
Sbjct: 22 EGLDGIEQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNN 81
Query: 285 KTLPYLVSNVIEL 323
K LPYLV NV+E+
Sbjct: 82 KMLPYLVGNVVEI 94
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 27.9 bits (59), Expect = 0.40
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 96 IWEDGEEALSEEVLRMPTDEIISRTRLLDN 185
++ DGE+ L E+ ++PT+ I S T DN
Sbjct: 324 LFVDGEKGLRSELSQIPTENIDSTTDRFDN 353
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 27.5 bits (58), Expect = 0.53
Identities = 15/69 (21%), Positives = 35/69 (50%)
Frame = +3
Query: 117 ALSEEVLRMPTDEIISRTRLLDNEIKIMKSEVMRIAHEHQAQNDKIKENTEKIKVNKTLP 296
ALS+ + +PT+ +LL ++M ++ +++ D + E +K +++ LP
Sbjct: 406 ALSQIAVEIPTEVSKHHAQLLPLVFELMSTQGVKVGKSACNCIDALLEGLDKSEISGYLP 465
Query: 297 YLVSNVIEL 323
L+ ++ L
Sbjct: 466 MLMERLVGL 474
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.5 bits (58), Expect = 0.53
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 84 EDKSIWEDGEEALSEEVLRMPTDEIISRTRLLDNEIKIMKSEVMRIAHEHQAQNDKIKEN 263
+DK+ E E +S + + E I++ + NE+K+ K + + + N KE+
Sbjct: 824 QDKNQIETLNERISAAADELSSMESINKNQA--NELKLAKQKCSNLQEKINFGNKLAKEH 881
Query: 264 TEKI 275
TEKI
Sbjct: 882 TEKI 885
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 1.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 302 KVG*CFVHFNLLRVFFYFVVLS 237
KVG CF+ F LL Y ++LS
Sbjct: 11 KVGCCFLIFGLLNNLLYVIILS 32
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.2 bits (55), Expect = 1.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 144 PTDEIISRTRLLDNEIKIMKSEVMRIAHEHQAQNDKIKE 260
P+ EI S+ DNE ++ + + I++E+ +ND +E
Sbjct: 61 PSVEIRSKLVSPDNEANLLSDQNITISNENNNENDTTEE 99
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.8 bits (54), Expect = 1.6
Identities = 17/83 (20%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +3
Query: 60 QITMATTLEDKSIWEDGEEALSEEVLRMPTDEI--ISRTRLLDNEIKIMKSEVMRIAHEH 233
Q+T+ +L+ D + L +L+ +DE+ I+ T L+DN ++ ++ ++ +
Sbjct: 294 QLTICPSLQGFEF--DSKGNLDVSLLKSLSDEVNMITTTSLVDNTMEKTDADAASLSSDS 351
Query: 234 QAQNDKIKENTEKIKVNKTLPYL 302
+ I E++ ++ PY+
Sbjct: 352 DGEEGHIVHALEEMAYDEENPYV 374
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 2.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 215 HDFAFHYFNFVVQESCTADDFI 150
H++ H + +++E T DDFI
Sbjct: 207 HEYRIHNADILIREDITVDDFI 228
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.0 bits (52), Expect = 2.8
Identities = 24/82 (29%), Positives = 40/82 (48%)
Frame = +3
Query: 69 MATTLEDKSIWEDGEEALSEEVLRMPTDEIISRTRLLDNEIKIMKSEVMRIAHEHQAQND 248
+A E + I++ + EEV T E + LL + ++ +S +++ HQ +D
Sbjct: 652 LAYRRESQKIYKLSIDTFGEEVPWTSTPETLV---LLCRQFELTRSALVQ---SHQGTSD 705
Query: 249 KIKENTEKIKVNKTLPYLVSNV 314
ENT KIK L +VSN+
Sbjct: 706 V--ENTFKIKDKGVLRNVVSNL 725
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.0 bits (52), Expect = 2.8
Identities = 10/46 (21%), Positives = 25/46 (54%)
Frame = +3
Query: 180 DNEIKIMKSEVMRIAHEHQAQNDKIKENTEKIKVNKTLPYLVSNVI 317
DN++ +++ +M + N+K+ E + +KTL ++ S ++
Sbjct: 700 DNDMASLEAPMMSHNTDTDTLNNKLNEKDNVVFEDKTLQHVASEIV 745
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 81 LEDKSIWEDG---EEALSEEVLRMPTDEIISRTRLLDNEIKI 197
+ DK WE+ +E + R+PTD+ +++ N +K+
Sbjct: 462 VHDKKSWEEMNAIQEYFQRPITRVPTDDYEELEKVVKNALKM 503
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 24.2 bits (50), Expect = 4.9
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 180 DNEIKIMKSEVMRIAHEHQAQNDKIKENTEKIK 278
DNE K MK E + + Q + ++ + ++K+K
Sbjct: 89 DNEAKKMKREKEILRQQRQKRKSELTQLSQKVK 121
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 24.2 bits (50), Expect = 4.9
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 87 DKSIWEDGEEALSEEVLRMPTDEIISRTRLLDNEIKIMKSEVMRIAHEHQAQNDKIKENT 266
DKS ++ E+ L L + +ISR + K SE+ Q QN+ K++
Sbjct: 139 DKSFRKNMEDELRITRLASENNVLISRI----DRTKRHFSELFTQKQMLQLQNENFKDDY 194
Query: 267 EKIK-VNKTL 293
EKIK NK L
Sbjct: 195 EKIKEENKRL 204
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 24.2 bits (50), Expect = 4.9
Identities = 14/69 (20%), Positives = 27/69 (39%)
Frame = +3
Query: 84 EDKSIWEDGEEALSEEVLRMPTDEIISRTRLLDNEIKIMKSEVMRIAHEHQAQNDKIKEN 263
+DK + DG +E + S+ R++ N+ +V+ ND +
Sbjct: 81 DDKLVGSDGVSTTPDEYFEQQSTRSRSKPRIISNKETTTSKDVVHPVKTENFANDLDTTS 140
Query: 264 TEKIKVNKT 290
K V++T
Sbjct: 141 DSKPVVHQT 149
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 23.8 bits (49), Expect = 6.5
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 81 LEDKSIWEDGEEALSEEVLR 140
+ED++I +DGE A++E+ R
Sbjct: 152 IEDENIIDDGETAINEQKKR 171
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 23.8 bits (49), Expect = 6.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 90 KSIWEDGEEALSEEVLRMPTDEIISRT 170
K+I D E L+EEVL TD+ ++ T
Sbjct: 285 KNILNDDELHLTEEVLSFLTDDPVTLT 311
>SPAC1952.07 |rad1||checkpoint clamp complex protein
Rad1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 23.8 bits (49), Expect = 6.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 60 QITMATTLEDKSIWEDGEEALSEEVLRMPTDEIISR 167
Q ++ L+ SI+ DG+E +S PT I+ +
Sbjct: 72 QTMISPLLQSLSIYTDGKERISTSAWDQPTVNIMHK 107
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 23.4 bits (48), Expect = 8.6
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 78 TLEDKSIWEDGEEALSEEVLRMPTDEIISRTRLLDNEIKIMKSEVMRIAHEHQAQN 245
T E E +L EEV R PTD+ + D + + K+E + I ++ ++
Sbjct: 702 TAEKPFTTEKPLSSLPEEVSRQPTDDKGEQVSNADVDSGLSKTERLTIQQTNEIKH 757
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 23.4 bits (48), Expect = 8.6
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = +3
Query: 150 DEIISRTRLLDNEIKIMKSEVMRIAHEHQAQNDKIKENTEKIKVNKTLPYLVS 308
+ + ++ LL NE+K ++S++ + HE+ + ++ + +K K ++ L S
Sbjct: 127 NSVTQKSNLL-NELKQVRSKLAALEHENGILSLQLSSSNKKDKNTSSVTTLTS 178
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 23.4 bits (48), Expect = 8.6
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +3
Query: 3 TRHEHIFYRFSIQN*IENTQITMATTLEDKSIWEDGEEALSEEVLR 140
+R + ++Y + +N + N +A L + SI E + +LR
Sbjct: 100 SREQTVYYAHAFKNAVPNAVAVLADILTNSSISASAVERERQVILR 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,227,813
Number of Sequences: 5004
Number of extensions: 23098
Number of successful extensions: 84
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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