Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E10
(223 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 105 8e-25
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 105 8e-25
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 105 8e-25
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 71 2e-14
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 70 4e-14
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 46 9e-07
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 0.44
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 1.0
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 1.0
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 24 3.1
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 23 4.1
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 23 4.1
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 23 7.2
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 23 7.2
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 23 7.2
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 7.2
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 23 7.2
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 22 9.5
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 22 9.5
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 22 9.5
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 22 9.5
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 22 9.5
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 22 9.5
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 22 9.5
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 22 9.5
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 22 9.5
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 105 bits (252), Expect = 8e-25
Identities = 51/72 (70%), Positives = 62/72 (86%)
Frame = +2
Query: 8 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 187
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++RFEEI KE S++IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKK 178
Query: 188 IGYDSAAVAFVP 223
+G++ V FVP
Sbjct: 179 VGFNPKTVPFVP 190
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 105 bits (252), Expect = 8e-25
Identities = 51/72 (70%), Positives = 62/72 (86%)
Frame = +2
Query: 8 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 187
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++RFEEI KE S++IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKK 178
Query: 188 IGYDSAAVAFVP 223
+G++ V FVP
Sbjct: 179 VGFNPKTVPFVP 190
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 105 bits (252), Expect = 8e-25
Identities = 51/72 (70%), Positives = 62/72 (86%)
Frame = +2
Query: 8 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 187
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S++RFEEI KE S++IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKK 178
Query: 188 IGYDSAAVAFVP 223
+G++ V FVP
Sbjct: 179 VGFNPKTVPFVP 190
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 70.9 bits (166), Expect = 2e-14
Identities = 33/74 (44%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Frame = +2
Query: 8 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 187
GEFEAG + GQTREHA+LA T G+ L+V +NKMD +SE R++E ++S ++++
Sbjct: 352 GEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRR 411
Query: 188 I-GYDSAA-VAFVP 223
+ GY+S V ++P
Sbjct: 412 VAGYNSKTDVKYMP 425
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 70.1 bits (164), Expect = 4e-14
Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +2
Query: 5 EGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSY-I 181
+ FE G +NGQTREHA L LG+ +++V VNK+D +SE RF+EIK VS + I
Sbjct: 290 QNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLI 347
Query: 182 KKIGYDSAAVAFVP 223
K +G+ ++ V FVP
Sbjct: 348 KMVGFKTSNVHFVP 361
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 45.6 bits (103), Expect = 9e-07
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +2
Query: 41 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSY 178
QTREH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 156 QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 0.44
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 117 PLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLS 218
P S +++ +K +LPTS K++T PS+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVS 435
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 1.0
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +2
Query: 41 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 181
QT EH + +K +I+ NK+D +E ++ I K + +
Sbjct: 149 QTSEHLAAIEIMQLKHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 119 TEPPYSESRFEEIKKEVSSYIKK 187
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 127 WLSGVHFVYSYNQLLDSECE 68
W++G H Y N L+S CE
Sbjct: 1214 WINGKHGSYCENNELNSGCE 1233
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 80 VKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 181
+ QLI + ++D TE P ++ +EE + SYI
Sbjct: 60 LSQLIDYILEVDETEIPSADGGYEEPEHTRLSYI 93
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 113 DSTEPPYSESRFEEIKKEVSSYIKKI 190
D P Y ++E +KK ++ I K+
Sbjct: 109 DVNTPEYQRMQWEALKKSINGLINKV 134
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 110 MDSTEPPYSESRFEEIKK 163
MDST P YSE + K
Sbjct: 1091 MDSTFPEYSEDELSSVDK 1108
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 22.6 bits (46), Expect = 7.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 156 ISSNRD-SLYGGSVESILFTPTISCLTPSVKASRAC 52
ISSN D SLY + I+ ++CLTP C
Sbjct: 854 ISSNEDISLYD-FLHKIMKKTNMNCLTPDASLRGDC 888
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 163 GSLFLHQENWLRFGCRRF 216
GS NWL++ CR F
Sbjct: 160 GSKLSRYYNWLKYNCRFF 177
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 146 IETHCMVAQWSPFCLLLQSV 87
+ET C +W C LL S+
Sbjct: 33 VETFCFFRRWKIACTLLCSI 52
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 80 VKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYDSA 205
+ L+V + K +S+ S S E +K + + IKK+ YD +
Sbjct: 354 LSDLLVSLRK-ESSSKELSASLKEFLKSLLEAIIKKMKYDES 394
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 22.2 bits (45), Expect = 9.5
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +2
Query: 62 LAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYDSAA 208
L T G+ L +G+ DS SE EEI S +K GY AA
Sbjct: 914 LTQTAGI--LGIGLLFHDSCHRRMSEVTMEEILASNESELKNEGYKLAA 960
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -1
Query: 184 LDVGRDFLLDFLKSRLTVWWLSGVHFVYSYNQLLDSECESEQS 56
+DVG L ++LK ++ + + Y N++ +S C Q+
Sbjct: 186 VDVGGKLLTNYLKEVISYRKYNMMEETYIVNEIKESVCYVSQN 228
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 22.2 bits (45), Expect = 9.5
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = +2
Query: 5 EGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIK 184
+G+ + ++++ + H+ LA T ++Q + + SES IKK + IK
Sbjct: 169 DGDPSSQVNQSRSRKTHSELAITKLLRQQVSSFMPYIDSSGSESESDNTRIKKSSAKTIK 228
Query: 185 KI 190
+
Sbjct: 229 AL 230
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 22.2 bits (45), Expect = 9.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 168 TSFLISSNRDSLYGGSVESILFTPTISCLTPS 73
TS S N+ Y GS+E+++ PT S TPS
Sbjct: 87 TSSANSINQPYNYSGSLENLV--PTPSAGTPS 116
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 145 SRLTVWWLSGVHFVYSYNQLLDS 77
S L + LS + +YSYN +D+
Sbjct: 1181 SELKILGLSQTYLLYSYNSKVDN 1203
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 105 TKWTPLSHHTVSLDLRKSRRKSLPTSRKLVT 197
T + P S TVS D +S ++ P+S T
Sbjct: 180 THFNPSSSSTVSSDSLESSQQKAPSSSSTAT 210
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 125 PPYSESRFEEIKKEVSS 175
PPY + FEEI E ++
Sbjct: 131 PPYVPTEFEEIPSEAAT 147
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 32 KNGQTREHALLAFTLGVKQLIV 97
+NGQ EH+L LGV +I+
Sbjct: 600 QNGQVIEHSLRRNQLGVAPIIL 621
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 92 IVGVNKMDSTEPPYSESRFEEIKK 163
+VG+ P SES FEEI K
Sbjct: 117 VVGLRGQPGIIPHISESIFEEIDK 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 921,395
Number of Sequences: 5004
Number of extensions: 15854
Number of successful extensions: 80
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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