Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E10
         (223 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   0.73 
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    22   2.2  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            22   2.9  
AF000953-1|AAB96576.1|  433|Anopheles gambiae carboxypeptidase A...    21   3.9  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    21   6.8  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    21   6.8  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    20   9.0  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    20   9.0  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 172 RDFLLDFLKSRLTVWWLSGVHFVYSYNQLLDSECESEQSVFTRLSVL 32
           R+  ++F K    + +L+ ++  Y Y QL     ESE+++    SV+
Sbjct: 214 REHYIEFQKVCRDIEYLTRLYVSYRYLQLCKGVEESERTIANLQSVI 260


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +2

Query: 125 PPYSESRFEEIKKEVSSYIKKIGYDSAAVAF 217
           PP+S      +KK+   Y+++   + +A  F
Sbjct: 333 PPWSNRTLRNLKKDRMKYLRRYRLNRSAFNF 363


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 108 KWTPLSHHTVSLDLRKSRRKSLPTSR 185
           +W P S  T  LD+ K  +  L +SR
Sbjct: 459 EWKPFSEPTRHLDIFKRWKSILASSR 484


>AF000953-1|AAB96576.1|  433|Anopheles gambiae carboxypeptidase A
           protein.
          Length = 433

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 127 WLSGVHFVYSYNQLLDSE 74
           W+S     Y  NQLL SE
Sbjct: 191 WISPATVTYILNQLLTSE 208


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 131 MVAQWSPFCLL 99
           +V Q+ PFCLL
Sbjct: 2   LVTQFCPFCLL 12


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 143 ETHCMVAQWSPFCLLLQSVA*LRV*KRAERVH 48
           ET  ++A  +P CLLL   A  RV +R   V+
Sbjct: 828 ETATLLAGLTPICLLLDEDA--RVYQRLSAVN 857


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 134 CMVAQWSPFCLLL 96
           C++A   P CL+L
Sbjct: 806 CVIASMVPICLIL 818


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 143 ETHCMVAQWSPFCLLLQ 93
           E  C++A   P C+ L+
Sbjct: 864 EAVCVIASMMPLCITLE 880


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,198
Number of Sequences: 2352
Number of extensions: 4017
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 51
effective length of database: 444,027
effective search space used:  9768594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)