Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E10
(223 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 120 1e-28
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 120 1e-28
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 73 3e-14
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 69 5e-13
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 67 2e-12
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 67 2e-12
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 60 2e-10
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 36 0.005
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 36 0.005
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 36 0.005
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 32 0.048
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 32 0.048
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.084
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 27 1.8
U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical pr... 26 4.2
AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm rece... 25 5.5
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 25 5.5
AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm rece... 25 7.3
Z81575-2|CAB04639.1| 339|Caenorhabditis elegans Hypothetical pr... 25 9.6
U46674-2|AAA85754.1| 162|Caenorhabditis elegans Hypothetical pr... 25 9.6
AL021175-3|CAA15963.2| 467|Caenorhabditis elegans Hypothetical ... 25 9.6
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 120 bits (289), Expect = 1e-28
Identities = 58/72 (80%), Positives = 62/72 (86%)
Frame = +2
Query: 8 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 187
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE+RF EI EVS +IKK
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 188 IGYDSAAVAFVP 223
IGY+ AV FVP
Sbjct: 181 IGYNPKAVPFVP 192
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 120 bits (289), Expect = 1e-28
Identities = 58/72 (80%), Positives = 62/72 (86%)
Frame = +2
Query: 8 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 187
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE+RF EI EVS +IKK
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 188 IGYDSAAVAFVP 223
IGY+ AV FVP
Sbjct: 181 IGYNPKAVPFVP 192
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 72.9 bits (171), Expect = 3e-14
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = +2
Query: 8 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 187
GEFE G + GQTREH++L T GVK L++ VNKMD + E RF+EI+ +++ +++K
Sbjct: 223 GEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRK 282
Query: 188 IGYD-SAAVAFVP 223
+G++ + +VP
Sbjct: 283 LGFNPKTDITYVP 295
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 68.9 bits (161), Expect = 5e-13
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = +2
Query: 89 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYDSAAVAFVP 223
L+V NKMDSTEPP+SE+RF EI EVS +IKKIGY+ AV FVP
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVP 158
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 66.9 bits (156), Expect = 2e-12
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +2
Query: 8 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI-K 184
GEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ +
Sbjct: 284 GEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTR 341
Query: 185 KIGYDSAAVAFVP 223
+ G+ FVP
Sbjct: 342 QAGFSKP--KFVP 352
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 66.9 bits (156), Expect = 2e-12
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +2
Query: 8 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI-K 184
GEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ +
Sbjct: 302 GEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTR 359
Query: 185 KIGYDSAAVAFVP 223
+ G+ FVP
Sbjct: 360 QAGFSKP--KFVP 370
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 60.1 bits (139), Expect = 2e-10
Identities = 33/52 (63%), Positives = 37/52 (71%)
Frame = +2
Query: 8 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKK 163
GEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R + I++
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTIQR 169
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 35.5 bits (78), Expect = 0.005
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = +2
Query: 41 QTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGY--DSAA 208
QTREH LLA +GV ++V +NK+D E P +E+R E ++ ++ + + GY D+
Sbjct: 152 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGYPGDTCP 208
Query: 209 VAF 217
V F
Sbjct: 209 VIF 211
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 35.5 bits (78), Expect = 0.005
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = +2
Query: 41 QTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGY--DSAA 208
QTREH LLA +GV ++V +NK+D E P +E+R E ++ ++ + + GY D+
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGYPGDTCP 209
Query: 209 VAF 217
V F
Sbjct: 210 VIF 212
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 35.5 bits (78), Expect = 0.005
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = +2
Query: 41 QTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGY--DSAA 208
QTREH LLA +GV ++V +NK+D E P +E+R E ++ ++ + + GY D+
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGYPGDTCP 209
Query: 209 VAF 217
V F
Sbjct: 210 VIF 212
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 32.3 bits (70), Expect = 0.048
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 41 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYDSAAVAFV 220
QT+EH +LA +GVK + + +NK D E E + ++ E + G++ A +
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFNGDATPVI 203
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 32.3 bits (70), Expect = 0.048
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 41 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYDSAAVAFV 220
QT+EH +LA +GVK + + +NK D E E + ++ E + G++ A +
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFNGDATPVI 203
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 31.5 bits (68), Expect = 0.084
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +2
Query: 41 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYD 199
QT EH LLA ++I+ +NK D E +S+ E K+V +K +G D
Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVD 160
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 151 LKSRLTVWWLSGVHFVYSYN 92
+KS L ++WL V+F +SYN
Sbjct: 250 IKSLLHIFWLPHVYFPFSYN 269
>U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical
protein ZK354.3 protein.
Length = 312
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 107 KMDSTEPPYSESRFEEIKKEVSSYIKK 187
KMD +P E + EE KKE+ KK
Sbjct: 160 KMDDKKPGEKEEKKEEFKKEMKKEEKK 186
>AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm
receptor protein 86 protein.
Length = 341
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 166 FLLDFLKSRLTVWWLSGVHFVYSYNQLLD 80
FL+DF T+ L VHF+Y Y + D
Sbjct: 88 FLIDFCAFYFTLILLLVVHFIYRYVVVCD 116
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 108 LFTPTISCLTPSVKASRACSRVCPFFEIPASN 13
LF PT+SC+ AS S P PA++
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPAND 44
>AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm
receptor protein 85 protein.
Length = 340
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 166 FLLDFLKSRLTVWWLSGVHFVYSYNQLLDS 77
FLL F T+ L VHF+Y Y + DS
Sbjct: 88 FLLGFCAIYYTLITLLVVHFIYRYIVICDS 117
>Z81575-2|CAB04639.1| 339|Caenorhabditis elegans Hypothetical
protein R08H2.2 protein.
Length = 339
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 181 DVGRDFLLDFLKSRLTVWWLSGVHFVYSYNQLLD 80
D+ FL+DF T+ + VHF+Y Y + D
Sbjct: 88 DLAPIFLVDFCGIYFTLILILVVHFIYRYVVVCD 121
>U46674-2|AAA85754.1| 162|Caenorhabditis elegans Hypothetical
protein T26A8.3 protein.
Length = 162
Score = 24.6 bits (51), Expect = 9.6
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +3
Query: 126 HHTVSLDLRKSRRKSLPTSRKLV 194
+HT+ +DL+KS+R+ + K++
Sbjct: 125 YHTLDIDLQKSKRRLQAFNHKII 147
>AL021175-3|CAA15963.2| 467|Caenorhabditis elegans Hypothetical
protein Y6E2A.4 protein.
Length = 467
Score = 24.6 bits (51), Expect = 9.6
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +2
Query: 50 EHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYDSAAVAFVP 223
E+ + FT KQ K+D E + ++RF+++ ++++ +KI + V+++P
Sbjct: 113 ENEINMFTGAAKQY----GKVDFHEELWQQTRFQKLTSAITNFSEKI--QNKTVSYIP 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,019,888
Number of Sequences: 27780
Number of extensions: 84983
Number of successful extensions: 375
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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