Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E09
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   146   1e-36
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   146   1e-36
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    31   0.066
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    27   0.62 
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    27   0.62 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   1.4  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   1.9  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   2.5  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   3.3  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   4.4  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    25   4.4  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    25   4.4  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    24   5.8  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    24   5.8  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  146 bits (353), Expect = 1e-36
 Identities = 68/100 (68%), Positives = 82/100 (82%)
 Frame = +3

Query: 45  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 224
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NT++GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 225 DTGNFAWGSECSTRKTRIIDVVYNASDNELVRTKTLVKNA 344
           D+GNF+WGSE  ++KTRII V Y+ S+NELVRT TL K+A
Sbjct: 61  DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSA 100


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  146 bits (353), Expect = 1e-36
 Identities = 68/100 (68%), Positives = 82/100 (82%)
 Frame = +3

Query: 45  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 224
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NT++GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 225 DTGNFAWGSECSTRKTRIIDVVYNASDNELVRTKTLVKNA 344
           D+GNF+WGSE  ++KTRII V Y+ S+NELVRT TL K+A
Sbjct: 61  DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSA 100


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 30.7 bits (66), Expect = 0.066
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +3

Query: 57   RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 230
            RD  +K +  G       K+ +   EL    +N  +  Q+  L+ S    T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142

Query: 231  GNFAWGSECSTRKTRI 278
            G+     E +  K RI
Sbjct: 1143 GDLMAVKEVALHKPRI 1158


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 147 WQPGDLTHTSSSYEWAHVC 91
           W PG      SS++W HVC
Sbjct: 278 WSPGKYDVFGSSHQWFHVC 296


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 4   NWHEEIFSFLTQPRWVSVVIIGIRGGLRAANVRPFVRRGSMS*VARLPTLSLVPNAS 174
           N+ + +  FL  P    +++IG  GG    +   F+R  + S     P +S +  A+
Sbjct: 220 NFIDALKLFLDDPNTQGIILIGEIGGSAEEDAAEFIRAANASRSTPKPVVSFIAGAT 276


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 95   FAARSPPLMPMITTDTHLGWVRKEKIS 15
            F+ +   L+P+ITT THL  V  +K S
Sbjct: 1201 FSEKYTQLIPVITTYTHLSEVENKKYS 1227


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 3   ELARGNLFFSDPAKMGISR-DHWHKRRATGGKRAPIRKKRKYE 128
           ++ RG      PA     R D W   +A G   +PIR+ ++Y+
Sbjct: 738 KIIRGESGVKLPATYRSGRFDEWKASKAFGANDSPIRENKRYK 780


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 30  SDPAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 149
           S+  K G  +     RRA     A  RKK K + GRP +N
Sbjct: 2   SETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 3   ELARGNLFFSDPAKMGISRDHWHKRRATGGKRAPIRKKRKYELG 134
           E + GN F S+P  +   +   +    T      +RKKRK  +G
Sbjct: 565 EASNGNTFGSNPVSLPNQQKSVNPSLMTVSSPRQVRKKRKSSIG 608


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 30  SDPAK-MGISRDHWHKRRATGGKRAPIR 110
           SDP   +  SR H H+ R+T  K  P R
Sbjct: 26  SDPVTVLDRSRTHHHRGRSTSSKAQPFR 53


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -3

Query: 199 LPPRDLTKWMRWG-PSL 152
           L P+D+ KW RW  PSL
Sbjct: 32  LSPQDILKWCRWTLPSL 48


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +3

Query: 60  DHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNF 239
           + W K   T  K+    +KRK  L R A   +L  + +  + S+GG    +A + ++   
Sbjct: 32  EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAKKNSSLD 90

Query: 240 AWGSE 254
           A+ +E
Sbjct: 91  AFLNE 95


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 241 AKFPVSRRRA-RYLVLPPRDLTKW 173
           AK P+ +RR  + L+L  RDLT W
Sbjct: 420 AKKPILKRRTPQELLLSGRDLTPW 443


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 245 PCEVSSIKTQGTIFSVTTTGSD 180
           P  V+SIK  GT FS    G+D
Sbjct: 768 PTAVASIKVSGTEFSTLLHGND 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,545,361
Number of Sequences: 5004
Number of extensions: 30665
Number of successful extensions: 77
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)