Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E09
(345 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 152 8e-38
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 151 1e-37
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 30 0.56
04_03_0182 - 12349072-12349149,12349459-12349656,12349746-123497... 29 0.74
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 0.98
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 29 1.3
06_01_0913 - 7042230-7043332,7043420-7043621 28 2.3
04_04_1217 + 31820734-31820841,31820929-31821078,31821183-318212... 27 3.0
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 27 3.9
05_05_0137 - 22641577-22642119 27 3.9
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 27 3.9
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 26 6.9
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 152 bits (368), Expect = 8e-38
Identities = 74/101 (73%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Frame = +3
Query: 45 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 221
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 222 LDTGNFAWGSECSTRKTRIIDVVYNASDNELVRTKTLVKNA 344
LDTGN++WGSE TRKTRI+DVVYNAS+NELVRT+TLVK+A
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSA 101
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 151 bits (367), Expect = 1e-37
Identities = 74/101 (73%), Positives = 84/101 (83%), Gaps = 1/101 (0%)
Frame = +3
Query: 45 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 221
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 222 LDTGNFAWGSECSTRKTRIIDVVYNASDNELVRTKTLVKNA 344
LDTGN++WGSE TRKTRI+DVVYNAS+NELVRT+TLVK+A
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSA 101
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 29.9 bits (64), Expect = 0.56
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +3
Query: 117 RKYELGRPAANTKLGPQRIHLVRSR----GGNTKYRALRLDTGN-FAWGS 251
R+ +LG P+ +T+ P+R+ +++R K+ A DTG F WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>04_03_0182 -
12349072-12349149,12349459-12349656,12349746-12349750,
12349928-12350041,12350129-12350240,12350363-12350377
Length = 173
Score = 29.5 bits (63), Expect = 0.74
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 268 LRVEHSDPHAKFPVSRRRARYLVLPPRDLTKWMRWGPSLV 149
LRV H H + +R R + + P ++ K RWG ++
Sbjct: 16 LRVMHFSGHGDWTTNRDRPTFTLYPLQECYKLWRWGTQMI 55
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.1 bits (62), Expect = 0.98
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 72 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 206
KRR GG+RA R+K + E GR A + R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 29.1 bits (62), Expect = 0.98
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 72 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTKYRALR 221
KRR GG+RA R+K + E GR A + + R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGRRKRRRGGRRRRRRRR 131
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 72 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 206
+RR GG+RA R+K + E GR A + R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 147 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 55
W+ GD+ HT ++ W+ C +YA HD
Sbjct: 570 WKMGDIVHTLTNRRWSEKC----VTYAESHD 596
>06_01_0913 - 7042230-7043332,7043420-7043621
Length = 434
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 232 PVSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSY 122
P +R+ R+ P +T + W P L +AAGRP ++
Sbjct: 180 PGTRKFWRW-AFPTHGVTVSVYWAPFLAMAAGRPENF 215
>04_04_1217 +
31820734-31820841,31820929-31821078,31821183-31821281,
31821398-31821490,31821585-31821851
Length = 238
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 77 PLMPMITTDTHLGWVRKEKI 18
P++PM+ T THL W RK +
Sbjct: 162 PIVPMVVTGTHLAW-RKNSL 180
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 247 PHAKFPVSRRRARYLVLPPRDLTKWMRWGP 158
P +RRR R+ + PPR +RW P
Sbjct: 18 PSPAVAATRRRLRFPLAPPRPRPPPLRWSP 47
>05_05_0137 - 22641577-22642119
Length = 180
Score = 27.1 bits (57), Expect = 3.9
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = -3
Query: 247 PHAKFPVSRR-------RARYLVLPPRDLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLP 89
PHA +S R R R +PP LT G L + P S LFLR GAR
Sbjct: 27 PHAALAISHRGKSCVRARGRRGRIPPAPLTA----GHESCLVSAVPLSGTLFLRSGAREL 82
Query: 88 PVA 80
P+A
Sbjct: 83 PLA 85
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 27.1 bits (57), Expect = 3.9
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -3
Query: 187 DLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLPPV---ALLL 71
DL W R S AG +FLF R G P V ALLL
Sbjct: 20 DLVLWRRRNVSAAAVAGATAVWFLFERAGYSFPSVMANALLL 61
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 235 TSHGDLNVQPARLVLLMLFIMPLTMNWCVPRP 330
TSHG+ + +P+ L L+ F++P + N + P
Sbjct: 2527 TSHGNQHQRPSILASLLPFVLPSSSNPSLTAP 2558
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,738,160
Number of Sequences: 37544
Number of extensions: 233388
Number of successful extensions: 607
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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