Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E09
         (345 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8 prot...   187   9e-48
BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8 pr...   187   9e-48
AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8 pr...   187   9e-48
AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8 pr...   187   9e-48
AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8 pr...   128   6e-30
AF521131-1|AAM80488.1|  354|Homo sapiens platelet receptor for t...    30   1.7  

>X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  187 bits (455), Expect = 9e-48
 Identities = 85/99 (85%), Positives = 90/99 (90%)
 Frame = +3

Query: 45  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 224
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60

Query: 225 DTGNFAWGSECSTRKTRIIDVVYNASDNELVRTKTLVKN 341
           D GNF+WGSEC TRKTRIIDVVYNAS+NELVRTKTLVKN
Sbjct: 61  DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN 99


>BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  187 bits (455), Expect = 9e-48
 Identities = 85/99 (85%), Positives = 90/99 (90%)
 Frame = +3

Query: 45  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 224
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60

Query: 225 DTGNFAWGSECSTRKTRIIDVVYNASDNELVRTKTLVKN 341
           D GNF+WGSEC TRKTRIIDVVYNAS+NELVRTKTLVKN
Sbjct: 61  DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN 99


>AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  187 bits (455), Expect = 9e-48
 Identities = 85/99 (85%), Positives = 90/99 (90%)
 Frame = +3

Query: 45  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 224
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60

Query: 225 DTGNFAWGSECSTRKTRIIDVVYNASDNELVRTKTLVKN 341
           D GNF+WGSEC TRKTRIIDVVYNAS+NELVRTKTLVKN
Sbjct: 61  DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN 99


>AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  187 bits (455), Expect = 9e-48
 Identities = 85/99 (85%), Positives = 90/99 (90%)
 Frame = +3

Query: 45  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 224
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60

Query: 225 DTGNFAWGSECSTRKTRIIDVVYNASDNELVRTKTLVKN 341
           D GNF+WGSEC TRKTRIIDVVYNAS+NELVRTKTLVKN
Sbjct: 61  DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN 99


>AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8
           protein.
          Length = 188

 Score =  128 bits (308), Expect = 6e-30
 Identities = 69/99 (69%), Positives = 73/99 (73%)
 Frame = +3

Query: 45  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 224
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGG         
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51

Query: 225 DTGNFAWGSECSTRKTRIIDVVYNASDNELVRTKTLVKN 341
                     C TRKTRIIDVVYNAS+NELVRTKTLVKN
Sbjct: 52  ----------C-TRKTRIIDVVYNASNNELVRTKTLVKN 79


>AF521131-1|AAM80488.1|  354|Homo sapiens platelet receptor for type
           III collagen protein.
          Length = 354

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 3   ELARGNLFFSDPAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HL 179
           E   G L      +  +SRDH H   A    R  ++KK+K EL      T +   RI  +
Sbjct: 30  EAEAGELLEPKRCRFAVSRDHCHCTLAWKTARLHLKKKKKKELNL-VYTTVMNTNRIFKM 88

Query: 180 VRSRGGNTK 206
           + SR  N K
Sbjct: 89  IFSRVANVK 97


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,146,694
Number of Sequences: 237096
Number of extensions: 1237801
Number of successful extensions: 5895
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5895
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1968306988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)