Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E09
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   155   6e-39
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    32   0.13 
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    32   0.13 
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    32   0.13 
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    32   0.13 
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    32   0.13 
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    32   0.13 
U41992-1|AAA83354.2|  514|Caenorhabditis elegans Importin alpha ...    30   0.39 
AF040995-1|AAB97171.1|  514|Caenorhabditis elegans importin alph...    30   0.39 
AF005266-1|AAQ13407.1|  423|Caenorhabditis elegans importin alph...    30   0.39 
U20861-9|AAN84854.1|  192|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr...    26   6.3  
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p...    26   6.3  
Z66494-6|CAE48497.1|  423|Caenorhabditis elegans Hypothetical pr...    26   6.3  
Z66494-5|CAA91259.1|  473|Caenorhabditis elegans Hypothetical pr...    26   6.3  
U64844-14|AAO25986.1|  375|Caenorhabditis elegans Hypothetical p...    26   6.3  
U64844-13|AAD56301.1|  453|Caenorhabditis elegans Hypothetical p...    26   6.3  
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    26   8.3  
U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    26   8.3  
U64604-1|AAF98623.1|  243|Caenorhabditis elegans Hypothetical pr...    26   8.3  
AC024801-12|AAF59643.4|  569|Caenorhabditis elegans Hypothetical...    26   8.3  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  155 bits (377), Expect = 6e-39
 Identities = 71/100 (71%), Positives = 83/100 (83%)
 Frame = +3

Query: 45  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 224
           MGISRD WHKR  TG  +    KKRK+ELGRPAANTK+G  R+ LVR+RGGN KYRALRL
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60

Query: 225 DTGNFAWGSECSTRKTRIIDVVYNASDNELVRTKTLVKNA 344
           D+GNF+W SE +TRKTRI+D +YNA++NELVRTKTLVK A
Sbjct: 61  DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGA 100


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 213 ALRLDTGNFAWGSECSTRKTRIIDVVYNASDNELV 317
           A+++D G+FAWGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 213 ALRLDTGNFAWGSECSTRKTRIIDVVYNASDNELV 317
           A+++D G+FAWGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 213 ALRLDTGNFAWGSECSTRKTRIIDVVYNASDNELV 317
           A+++D G+FAWGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 213 ALRLDTGNFAWGSECSTRKTRIIDVVYNASDNELV 317
           A+++D G+FAWGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 213 ALRLDTGNFAWGSECSTRKTRIIDVVYNASDNELV 317
           A+++D G+FAWGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 213 ALRLDTGNFAWGSECSTRKTRIIDVVYNASDNELV 317
           A+++D G+FAWGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41992-1|AAA83354.2|  514|Caenorhabditis elegans Importin alpha
           family protein 3 protein.
          Length = 514

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 166 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 41
           W  S V  +GRPN     +++G   P  A+L C  S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424


>AF040995-1|AAB97171.1|  514|Caenorhabditis elegans importin alpha 3
           protein.
          Length = 514

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 166 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 41
           W  S V  +GRPN     +++G   P  A+L C  S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424


>AF005266-1|AAQ13407.1|  423|Caenorhabditis elegans importin alpha-3
           subunit protein.
          Length = 423

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 166 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 41
           W  S V  +GRPN     +++G   P  A+L C  S++I ++
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 333


>U20861-9|AAN84854.1|  192|Caenorhabditis elegans Hypothetical
           protein C28H8.9b protein.
          Length = 192

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +3

Query: 36  PAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTK 155
           P + G   D W  R+   G   P++K         A NTK
Sbjct: 149 PDEFGSDEDDWSSRKRRKGNLGPVQKATSSRKKNAARNTK 188


>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
            C26C6.1a protein.
          Length = 1883

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +3

Query: 126  ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSEC 257
            E  R      L  +R  L  S+    G T ++ +R +TG F W  +C
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC 1209


>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
            protein C26C6.1a protein.
          Length = 1883

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +3

Query: 126  ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSEC 257
            E  R      L  +R  L  S+    G T ++ +R +TG F W  +C
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC 1209


>Z66494-6|CAE48497.1|  423|Caenorhabditis elegans Hypothetical
           protein C34C6.5b protein.
          Length = 423

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -2

Query: 332 QGLGTHQFIVRGIINNINNTSLAG*TFRSPCEVSSIKTQGTIFSV 198
           + LG H+F V G I + N  S  G     P +         +FSV
Sbjct: 209 KSLGHHRFTVMGFIRSCNLRSYKGRLTYRPYKPKGFHPSSNVFSV 253


>Z66494-5|CAA91259.1|  473|Caenorhabditis elegans Hypothetical
           protein C34C6.5a protein.
          Length = 473

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -2

Query: 332 QGLGTHQFIVRGIINNINNTSLAG*TFRSPCEVSSIKTQGTIFSV 198
           + LG H+F V G I + N  S  G     P +         +FSV
Sbjct: 259 KSLGHHRFTVMGFIRSCNLRSYKGRLTYRPYKPKGFHPSSNVFSV 303


>U64844-14|AAO25986.1|  375|Caenorhabditis elegans Hypothetical
           protein T22F3.11b protein.
          Length = 375

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 178 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 89
           KW+ W  +L    G      L+++ GARLP
Sbjct: 65  KWILWAVALGTMLGTVPINMLYVKYGARLP 94


>U64844-13|AAD56301.1|  453|Caenorhabditis elegans Hypothetical
           protein T22F3.11a protein.
          Length = 453

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 178 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 89
           KW+ W  +L    G      L+++ GARLP
Sbjct: 65  KWILWAVALGTMLGTVPINMLYVKYGARLP 94


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 57  RDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRS 188
           R HWHKR  T   + P RK R+ +  R A   ++ P+ +  L+RS
Sbjct: 15  RKHWHKRIKTWFDQ-PARKLRRRQ-NRQAKAVEIAPRPVAGLLRS 57


>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 57  RDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRS 188
           R HWHKR  T   + P RK R+ +  R A   ++ P+ +  L+RS
Sbjct: 15  RKHWHKRIKTWFDQ-PARKLRRRQ-NRQAKAVEIAPRPVAGLLRS 57


>U64604-1|AAF98623.1|  243|Caenorhabditis elegans Hypothetical
           protein F49E7.2 protein.
          Length = 243

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 193 VVTLNIVPCVLILETSHGDLNV 258
           ++ +N+  C+L+ + +HGD+ V
Sbjct: 39  ILIVNVQSCILLAKDNHGDMKV 60


>AC024801-12|AAF59643.4|  569|Caenorhabditis elegans Hypothetical
           protein Y50D7A.8 protein.
          Length = 569

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 30  SDPAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRG 194
           ++ A++   R    +R++   KRA  +K RK E  +P      G    HL+ S G
Sbjct: 257 AESARLRYQRMTPDERKSYNMKRAAAKKTRKEEEEKPDDMEHYGDNEEHLMDSSG 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,622,936
Number of Sequences: 27780
Number of extensions: 177943
Number of successful extensions: 442
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)