Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E08
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   0.93 
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    24   5.0  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    24   6.6  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    23   8.7  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    23   8.7  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 94   ILCNQVVTTILSLYPLFVIYLYKHKMY 14
            ++C     ++L + PLF +YLY    Y
Sbjct: 1038 VICYSAPLSLLLIVPLFFLYLYNRAYY 1064


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 302 HFSIRFGTRASCSTSGFDISSLYC 231
           H+  + GT    +  GFD+  ++C
Sbjct: 292 HYGSKLGTALQVAGPGFDVLQMFC 315


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 144 QTRPCGNHP*RLPDKLVDSP 203
           +  PCG  P   P KL D+P
Sbjct: 647 EQNPCGKLPITFPKKLKDNP 666


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 54  YKLKIVVTT*LHRIN*ISVHHDRS 125
           +K  I V T LH+ N I  +HD+S
Sbjct: 882 FKNFINVITQLHKTNYIQAYHDKS 905


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 160 PHGLVWLLRRAKLLS 116
           P G +W L RAKLLS
Sbjct: 271 PDGPMWPLHRAKLLS 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,115
Number of Sequences: 5004
Number of extensions: 26584
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)