Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E08
(321 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1572 - 34527730-34527859,34528077-34528136,34528253-345283... 29 1.1
04_04_1569 - 34486005-34486303,34486386-34486928,34487382-344877... 28 1.9
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 27 2.5
02_04_0509 - 23554609-23555241,23555371-23556318 27 3.3
04_04_1267 - 32257035-32257337,32257423-32257570,32257656-322578... 26 5.7
12_01_0805 - 7378364-7378435,7378534-7378616,7378843-7379020,737... 26 7.6
10_01_0138 + 1657028-1657489 26 7.6
10_01_0127 - 1519803-1520036,1520802-1521095,1521840-1522614,152... 26 7.6
05_03_0242 + 10823312-10823342,10823662-10823732,10824010-108240... 26 7.6
04_01_0229 - 2897484-2900402 26 7.6
03_05_0798 + 27798095-27798190,27798325-27798366,27799152-277991... 26 7.6
>04_04_1572 -
34527730-34527859,34528077-34528136,34528253-34528375,
34528506-34528960,34529343-34529876,34530638-34531501
Length = 721
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 207 ITENQPVYLEAFKDGFHTVLFGFFGGQNFCHDEL 106
++E+QP +F FH +LF F G FC L
Sbjct: 360 VSEHQPTAWSSFMFDFHILLFLFPAGLYFCFKRL 393
>04_04_1569 -
34486005-34486303,34486386-34486928,34487382-34487766,
34488450-34488650,34488739-34488951,34489210-34489446
Length = 625
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 190 WLILRDADSGKILWQYNEDMSNP 258
W+ + D DS + W+ EDMS P
Sbjct: 148 WVQVGDGDSDHLCWERAEDMSTP 170
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 109 FIMTEVLPAEEAKQDRVETILKGFQINWLILRDADSGKILWQYNEDMSNPEVEHEA 276
F++T EE K VET+L+G + R +S WQ + + +V+H A
Sbjct: 803 FVLTTNWVPEELKGSNVETLLRGEE------RMLESTSSSWQLELSIGDKQVKHRA 852
>02_04_0509 - 23554609-23555241,23555371-23556318
Length = 526
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 205 DADSGKILWQYNEDMSNPEVEHEARVPKR 291
D S + W +E M NPE H+A++ R
Sbjct: 324 DTSSHMVQWVLSELMRNPEAMHKAQIELR 352
>04_04_1267 -
32257035-32257337,32257423-32257570,32257656-32257893,
32257994-32258351,32258791-32258969,32259071-32259175,
32259539-32260871
Length = 887
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 193 LILRDADSGKILWQYNEDMSN 255
L++RD SG +LWQ ++ SN
Sbjct: 145 LVVRDQGSGDVLWQSFDNPSN 165
>12_01_0805 -
7378364-7378435,7378534-7378616,7378843-7379020,
7379822-7379977,7380205-7380308,7381653-7381695,
7382142-7382234,7382391-7382686,7382795-7382942,
7383577-7383615
Length = 403
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 112 IMTEVLPAEEAKQDRVETILKGFQINWLILRDADSGKILWQYNEDMSNPEVEHE 273
+ +V P+ + +Q ++ INW L DAD+GK Y+ED + + H+
Sbjct: 191 LQIQVRPSAQIEQKKIVKN-STLIINWHTLSDADNGK----YSEDEDDYKRSHK 239
>10_01_0138 + 1657028-1657489
Length = 153
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 280 PELHAPLQDSTYLHCIARG 224
PE+ PL LHC+ARG
Sbjct: 77 PEVAPPLGQHARLHCLARG 95
>10_01_0127 -
1519803-1520036,1520802-1521095,1521840-1522614,
1524574-1525412
Length = 713
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 245 SSLYCQRIFPESASRRINQFIWK 177
S L C +FPE R N+ IW+
Sbjct: 434 SCLLCLSVFPEDYEIRRNRLIWR 456
>05_03_0242 +
10823312-10823342,10823662-10823732,10824010-10824021,
10827329-10827394,10827564-10827766,10827977-10828266,
10828377-10828468,10829876-10830344,10830670-10830978,
10831290-10831364,10831457-10831614
Length = 591
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 184 INWLILRDADSGKILWQYNEDMSNPEVEHEA 276
+NW I+RD DS K+ Y+ + P A
Sbjct: 243 LNWDIVRDGDSTKLTAAYSPPLPPPSAPASA 273
>04_01_0229 - 2897484-2900402
Length = 972
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 199 LRDADSG-KILWQYNEDMSNPEVEHE 273
LRD SG + Y EDMSN +HE
Sbjct: 619 LRDNSSGDETFASYGEDMSNKSSDHE 644
>03_05_0798 +
27798095-27798190,27798325-27798366,27799152-27799190,
27799238-27799420
Length = 119
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 157 HGLVWLLRRAKLLS**TEIQLILCNQVVTTI-LSLYPLFVI 38
HG +L + KLL+ T +++I+C+ +L P F+I
Sbjct: 38 HGKAYLFNKLKLLAYNTVLRIIVCDNFPNCFTTNLMPKFII 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,553,854
Number of Sequences: 37544
Number of extensions: 155976
Number of successful extensions: 372
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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