Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E07
         (217 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    52   1e-08
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    52   1e-08
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||...    25   1.0  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    24   3.1  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    23   4.1  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    23   5.5  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 51.6 bits (118), Expect = 1e-08
 Identities = 25/35 (71%), Positives = 30/35 (85%)
 Frame = +1

Query: 1   ARGGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 105
           +RGG  TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 22  SRGG-VTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 51.6 bits (118), Expect = 1e-08
 Identities = 25/35 (71%), Positives = 30/35 (85%)
 Frame = +1

Query: 1   ARGGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 105
           +RGG  TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 22  SRGG-VTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 205

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 66  DDLTASLSDELHFDLSTLSPSC 1
           DD+ A  +D +H D+ +   SC
Sbjct: 182 DDIAADFTDPIHLDMESQKTSC 203


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 156 IGPLSKSPGFTLRLEKGQDVSVADRSL 76
           + P+S  P  ++ L+   DVS AD S+
Sbjct: 168 LSPVSTFPASSISLDASSDVSAADVSV 194


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 129 FTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLS 10
           FT+ L   + ++V D S+  PD +   + D   FD S +S
Sbjct: 33  FTISLLLERAIAVHDPSIISPDQIAEKIED-CGFDASVIS 71


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 138 SPGFTLRLEKGQDVSVADRSLHVPDDLTASLSD 40
           +P   + LE    VS+ + SL   D+L  SLSD
Sbjct: 316 APSNWIALEALPLVSIPNESLDESDELAESLSD 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 813,144
Number of Sequences: 5004
Number of extensions: 11783
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)