Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E07
(217 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 52 6e-08
03_01_0468 - 3612079-3612197,3612679-3612850 42 7e-05
02_01_0006 - 42752-43816 28 1.2
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 27 2.7
12_02_0016 + 12350435-12350537,12351517-12351583,12351981-123520... 26 4.8
09_02_0133 + 4707944-4708308,4708320-4708534,4708626-4708672,470... 26 4.8
05_07_0308 + 29115892-29116083,29116771-29116885,29116978-291170... 26 4.8
07_03_0160 + 14556622-14556924 25 6.3
12_01_0628 - 5181814-5182344 25 8.3
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 52.0 bits (119), Expect = 6e-08
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = -2
Query: 144 SKSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLSP 7
++ PG LRLE+G+DV++ DR+L VP D T + +ELH DL L+P
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTP 650
>03_01_0468 - 3612079-3612197,3612679-3612850
Length = 96
Score = 41.9 bits (94), Expect = 7e-05
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = -2
Query: 144 SKSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLSP 7
+K PG L LE+G+DV++++R+L VP D T + EL L L+P
Sbjct: 10 AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHLGHLTP 55
>02_01_0006 - 42752-43816
Length = 354
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 69 EREGTCPRRRHPDPSRVGA*SQETSIKVLYPRLRLIMYQL 188
ER T P R P PS V A + E S ++ PR+R + L
Sbjct: 113 ERLSTAPARCFPSPSPVAA-AAEISTEIPQPRVRTTLLYL 151
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 108 GQDVSVADRSLHVPDDLTASLSDELHFDLSTLSPSC 1
G VS+ + LH+ + L +L+DE + + PSC
Sbjct: 918 GTLVSIVRQVLHLVEQLCLALNDEFRMYILHILPSC 953
>12_02_0016 +
12350435-12350537,12351517-12351583,12351981-12352047,
12352301-12352381,12352416-12352445,12352625-12352665,
12353083-12353212,12354096-12354327,12355244-12355332
Length = 279
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -2
Query: 150 PLSKSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLSPS 4
P+S P T+R + V D SL V DD A++SD DL +PS
Sbjct: 193 PISSVPPPTIRHHT--QIIVED-SLPVVDDFIAAISDFFALDLRHWAPS 238
>09_02_0133 +
4707944-4708308,4708320-4708534,4708626-4708672,
4708997-4709393,4710042-4710608,4710708-4710838,
4711274-4711747
Length = 731
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -2
Query: 129 FTLRLEKGQDVSVADRSLHVPDDLTASLSD 40
+ LR+ G + ++AD + +PD++ SD
Sbjct: 602 YLLRIGNGTENTIADDDVRLPDEIVIGYSD 631
>05_07_0308 +
29115892-29116083,29116771-29116885,29116978-29117087,
29118225-29118350,29118450-29118570,29118665-29118749,
29118854-29118967,29119061-29119100,29119517-29119665,
29120223-29120412,29121674-29122228,29123588-29123815,
29123904-29124044,29124134-29124334,29124447-29124728
Length = 882
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 8 GDSVLRSKWSSSERLAVRSSGT*RDLSATETS*PFSSRSVKPGDFD 145
G V S +SSSE + RSSG+ +A P + + P FD
Sbjct: 83 GPEVRSSSFSSSENVRARSSGSSSRSAAPPPPPPQTDSATNPLRFD 128
>07_03_0160 + 14556622-14556924
Length = 100
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 133 WLHAPTREGSGCLRRGQVPSRS 68
WLH PT GC R G S +
Sbjct: 18 WLHCPTGLSPGCSRSGLAHSEA 39
>12_01_0628 - 5181814-5182344
Length = 176
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 139 VSWLHAPTREGSGCLRRGQVP 77
+SWL +GSGC +G +P
Sbjct: 17 LSWLDLAVAQGSGCPAQGVLP 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,580,193
Number of Sequences: 37544
Number of extensions: 89642
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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