Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E07
         (217 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58682-1|AAB07066.1|   69|Homo sapiens ribosomal protein S28 pro...    62   4e-10
L05091-1|AAC15855.1|   69|Homo sapiens ribosomal protein S28 pro...    62   4e-10
CR457055-1|CAG33336.1|   69|Homo sapiens RPS28 protein.                62   4e-10
BC070218-1|AAH70218.1|   69|Homo sapiens ribosomal protein S28 p...    62   4e-10
BC070217-1|AAH70217.1|   69|Homo sapiens ribosomal protein S28 p...    62   4e-10
BC021239-1|AAH21239.1|   69|Homo sapiens ribosomal protein S28 p...    62   4e-10
BC000354-1|AAH00354.1|   69|Homo sapiens ribosomal protein S28 p...    62   4e-10
AB061846-1|BAB79484.1|   69|Homo sapiens ribosomal protein S28 p...    62   4e-10

>U58682-1|AAB07066.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 26/33 (78%), Positives = 31/33 (93%)
 Frame = +1

Query: 10  GQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 108
           GQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 25  GQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>L05091-1|AAC15855.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 26/33 (78%), Positives = 31/33 (93%)
 Frame = +1

Query: 10  GQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 108
           GQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 25  GQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>CR457055-1|CAG33336.1|   69|Homo sapiens RPS28 protein.
          Length = 69

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 26/33 (78%), Positives = 31/33 (93%)
 Frame = +1

Query: 10  GQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 108
           GQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 25  GQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC070218-1|AAH70218.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 26/33 (78%), Positives = 31/33 (93%)
 Frame = +1

Query: 10  GQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 108
           GQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 25  GQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC070217-1|AAH70217.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 26/33 (78%), Positives = 31/33 (93%)
 Frame = +1

Query: 10  GQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 108
           GQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 25  GQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC021239-1|AAH21239.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 26/33 (78%), Positives = 31/33 (93%)
 Frame = +1

Query: 10  GQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 108
           GQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 25  GQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC000354-1|AAH00354.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 26/33 (78%), Positives = 31/33 (93%)
 Frame = +1

Query: 10  GQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 108
           GQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 25  GQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>AB061846-1|BAB79484.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 26/33 (78%), Positives = 31/33 (93%)
 Frame = +1

Query: 10  GQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 108
           GQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 25  GQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,400,246
Number of Sequences: 237096
Number of extensions: 495807
Number of successful extensions: 925
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 76,859,062
effective HSP length: 50
effective length of database: 65,004,262
effective search space used: 1365089502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)