Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E07
(217 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 0.54
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 1.3
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 19 5.1
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 19 5.1
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 19 5.1
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 19 5.1
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 19 5.1
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 19 5.1
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 19 6.7
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 19 6.7
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 19 6.7
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 19 8.8
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 19 8.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 19 8.8
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.6 bits (46), Expect = 0.54
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = -3
Query: 182 VHYEP*PRV*DXXXXXXXXXXXXXXXRMSPSRTGPFTFLMI*RLVSPMNSTLT*VHCPP 6
V+ P P+V D M P + P+ FL VS M++T+ V PP
Sbjct: 793 VYCVPVPQVNDSTILSPVREKLSSSQPMQPPQQNPYMFLP----VSYMSTTMAGVIYPP 847
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 1.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 63 HQEREGTCPRRRHPDPSRVGA 125
++E P RR P P R+G+
Sbjct: 1689 YEELNHCAPNRRCPPPPRMGS 1709
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 19.4 bits (38), Expect = 5.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3
Query: 27 QSGVHRRD*PSDHQEREGTCPRRRH 101
+S H S H RE +C R R+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCSRDRN 242
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 19.4 bits (38), Expect = 5.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3
Query: 27 QSGVHRRD*PSDHQEREGTCPRRRH 101
+S H S H RE +C R R+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCSRDRN 242
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 19.4 bits (38), Expect = 5.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3
Query: 27 QSGVHRRD*PSDHQEREGTCPRRRH 101
+S H S H RE +C R R+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCSRDRN 242
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 19.4 bits (38), Expect = 5.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3
Query: 27 QSGVHRRD*PSDHQEREGTCPRRRH 101
+S H S H RE +C R R+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCSRDRN 242
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 19.4 bits (38), Expect = 5.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3
Query: 27 QSGVHRRD*PSDHQEREGTCPRRRH 101
+S H S H RE +C R R+
Sbjct: 207 RSRTHGFQHTSSHYSRERSCSRDRN 231
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 19.4 bits (38), Expect = 5.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3
Query: 27 QSGVHRRD*PSDHQEREGTCPRRRH 101
+S H S H RE +C R R+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCSRDRN 242
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 19.0 bits (37), Expect = 6.7
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -1
Query: 187 SWYIMSLNLGYRTFIEVSWLHAPT 116
SWY L + + V LH P+
Sbjct: 80 SWYDYKLKWDPKEYGGVEMLHVPS 103
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 19.0 bits (37), Expect = 6.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -2
Query: 132 GFTLRLEKGQDVSVADRSLHVPDDLTASL 46
GF E +S D +LHV L SL
Sbjct: 981 GFVTPFEHRHFISGIDSNLHVYAPLKISL 1009
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 19.0 bits (37), Expect = 6.7
Identities = 6/19 (31%), Positives = 9/19 (47%)
Frame = -1
Query: 142 EVSWLHAPTREGSGCLRRG 86
++ W + T E CL G
Sbjct: 121 DLDWKYYTTNESHACLSTG 139
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 18.6 bits (36), Expect = 8.8
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = -1
Query: 193 LDSWYIMSLNLG 158
LD W+ S N+G
Sbjct: 55 LDPWFAGSTNIG 66
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 18.6 bits (36), Expect = 8.8
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -1
Query: 187 SWYIMSLNLGYRTFIEVSWLHAPT 116
SWY L + + V LH P+
Sbjct: 84 SWYDYKLRWEPKEYGGVKMLHVPS 107
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 18.6 bits (36), Expect = 8.8
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -1
Query: 187 SWYIMSLNLGYRTFIEVSWLHAPT 116
SWY L + + V LH P+
Sbjct: 84 SWYDYKLRWEPKEYGGVKMLHVPS 107
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,689
Number of Sequences: 438
Number of extensions: 963
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used: 3154875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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