Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E06
         (257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             25   2.2  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    24   3.8  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    23   5.1  
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    23   6.7  

>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = +1

Query: 49  GPLMCQESGRWYIYGVTSNGYGCARAHRPGVYTKVSSYIEWIDAVIANN 195
           G L+ Q +  W +  +TS  Y C +     V    SSY    D +   N
Sbjct: 377 GSLIRQLNKSWEVVFLTSVIYSCCKTPAASVSNTFSSYKSLYDFIYDKN 425


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 136 GVYTKVSSYIEWIDAV 183
           G Y KV  YIE++D V
Sbjct: 571 GQYAKVEGYIEYMDGV 586


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 305

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 1  ARGERGGRDACLGDSGG 51
          ARG RGGR    G  GG
Sbjct: 43 ARGGRGGRGGARGGRGG 59


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 61  CQESGRWYIY 90
           C+ESG W IY
Sbjct: 147 CEESGEWVIY 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.139    0.459 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 670,226
Number of Sequences: 5004
Number of extensions: 10442
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)