Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E06
(257 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0338 - 22133181-22133537 30 0.29
03_02_0305 - 7280414-7280770 28 0.90
11_04_0258 + 15489733-15490054,15490150-15490339,15490438-154909... 28 1.2
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 28 1.2
03_01_0071 + 580988-581134,581276-581359,581499-581573,581892-58... 27 2.7
02_04_0411 + 22670418-22670499,22670708-22671045 27 2.7
11_02_0144 + 8773786-8773985,8774339-8774459,8774917-8775042 26 3.6
07_01_0432 + 3290546-3291911,3291972-3291988 26 3.6
03_02_0289 - 7115045-7115867,7116373-7116929,7117327-7117544,711... 26 4.8
12_02_1205 - 26982163-26982702 25 6.3
06_01_0048 + 436156-436406,436514-436693,436725-437133 25 6.3
03_05_0939 - 28983091-28983747,28983805-28983913,28984245-289848... 25 6.3
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023... 25 6.3
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 25 6.3
06_02_0339 + 14761074-14761421 25 8.4
01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746... 25 8.4
01_06_1284 + 35994595-35995074 25 8.4
01_05_0266 + 20209005-20209137,20209606-20210183 25 8.4
>02_04_0338 - 22133181-22133537
Length = 118
Score = 29.9 bits (64), Expect = 0.29
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +1
Query: 4 RGERGGRDACLGDSGGPLMCQESGRWYIYGVTSNGYGCARAHRPGVYTKVSSYIEW 171
RG G R A G GG L +ES RW G+ G R P + + +S+ +EW
Sbjct: 41 RGRLGARGAA-GGEGGDLGVRESYRWVWRGLRHTKAG--RRGAPVLGSHMSAELEW 93
>03_02_0305 - 7280414-7280770
Length = 118
Score = 28.3 bits (60), Expect = 0.90
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = +1
Query: 7 GERGGRDACLGDSGGPLMCQESGRWYIYGVTSNGYGCARAHRPGVYTKVSSYIEWIDAVI 186
G G R A G GG L +ES RW G+ G R P + + +S+ +EW ++
Sbjct: 42 GRLGARGAA-GGEGGDLGVRESCRWVWRGLWRTKAG--RRGAPVLGSHMSAELEWWWSIE 98
Query: 187 ANNTPPRDDAGSGY 228
A P D GY
Sbjct: 99 A---PAVDSQEGGY 109
>11_04_0258 +
15489733-15490054,15490150-15490339,15490438-15490910,
15501203-15501513
Length = 431
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 19 GRDACLGDSGGPLMCQESGRWYIY--GVTSNGYGCARAHRPGVYTKVSSYI 165
G C GD GG + ESG IY + +GCA + R V +VS +
Sbjct: 329 GAPPCRGDGGGGDVKVESGCLNIYTSANETRRFGCANSCRDQVLREVSRLV 379
>01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 100 SNGYGCARAHRPGVYTKVSSYIEWIDAVIANNTPPRDDAGSGYEPD 237
S G+ A+ R Y + +YIEW+D N R A S D
Sbjct: 1067 SQGHVRAQGRRDRTYRTLCNYIEWVDTENPQNDGTRPYARSESRSD 1112
>03_01_0071 +
580988-581134,581276-581359,581499-581573,581892-581973,
582078-582223,582337-582408,582765-582837,582933-582998,
583089-583123,583316-583387,583494-583622,583706-583813,
584062-584118,584323-584439,584530-584612,585345-585411,
585705-585776,585874-585924,586704-586763,586867-587016,
587107-587322
Length = 653
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 184 IANNTPPRDDAGSGYEPDEG 243
+ + TP D GSG EP+EG
Sbjct: 583 VVSATPETDGGGSGAEPEEG 602
>02_04_0411 + 22670418-22670499,22670708-22671045
Length = 139
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = +1
Query: 16 GGRDACLGDSGGPLMCQESGRWYIYGVTSNGYGCARAHR 132
GG D GD GGP C+ R YG GYG R HR
Sbjct: 97 GGDD---GDCGGP--CEH--RRCEYGCCEGGYGGDRGHR 128
>11_02_0144 + 8773786-8773985,8774339-8774459,8774917-8775042
Length = 148
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 7 GERGGRDACLGDSGGPLMCQESGRWYI-YGVTSNGYGCARAHRP 135
G++ + GD G P M + SGRW++ G+ + + AR + P
Sbjct: 38 GQKAISGSVQGDLGPPPMWRLSGRWHMGTGLEAELHNMARRNDP 81
>07_01_0432 + 3290546-3291911,3291972-3291988
Length = 460
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 103 NGYGCARAHRPGVYTKVSSYIEWIDAVIANNTPPRDDAGSG 225
+G G A P +YT ++ IDAV+ PP+D A G
Sbjct: 389 HGEGSAYLFDPDIYTDGRISVQGIDAVL---FPPKDTATGG 426
>03_02_0289 -
7115045-7115867,7116373-7116929,7117327-7117544,
7117829-7117928,7118665-7118832
Length = 621
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 25 DACLGDSGGPLMCQESGRWYIYGVTSNGYGCARAHRPGVYTKVSSYI 165
D +G SG P++ E+G W + C R G+ + +Y+
Sbjct: 64 DGSVGFSGQPILKHETGNWRACSLILGTEVCERLAYYGISKSLVTYL 110
>12_02_1205 - 26982163-26982702
Length = 179
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = +1
Query: 19 GRDACL-GDSGGPLMCQESGR 78
GR C GD GG L C SGR
Sbjct: 85 GRGGCATGDCGGALSCSLSGR 105
>06_01_0048 + 436156-436406,436514-436693,436725-437133
Length = 279
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 7 GERGGRDACLGDSGGPLMCQESGRWYIYGV 96
G+ G R A G GG L + SGRW G+
Sbjct: 211 GQLGARGAT-GGGGGDLGARRSGRWVWRGL 239
>03_05_0939 -
28983091-28983747,28983805-28983913,28984245-28984801,
28985197-28985414,28985508-28985613,28986352-28986429
Length = 574
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 25 DACLGDSGGPLMCQESGRWYIYGVTSNGYGCARAHRPGVYTKVSSYI 165
D + SG P++ + +GRW C R G+ T + +Y+
Sbjct: 36 DGSVDFSGNPVVKERTGRWRACPFILGNECCERLAYYGISTNLVTYL 82
>02_05_0938 +
32901143-32901215,32901841-32901982,32902243-32902314,
32902573-32902644,32902711-32902782,32902913-32902948,
32903001-32903072,32903319-32903387,32903483-32903554,
32903668-32903739,32903838-32903909,32904153-32904224,
32904470-32904541,32904623-32904694,32904782-32904853,
32904911-32905003,32905150-32905218,32905315-32905386,
32905479-32905552,32905643-32905771,32905966-32906331,
32906584-32906954,32907522-32907890
Length = 884
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 13 RGGRDACLGDSGGPLMCQESGRWYI 87
RG R L S P MCQ +G WY+
Sbjct: 156 RGLRSNNLEGSLSPEMCQLTGLWYL 180
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 145 TKVSSYIEWIDAVIANNTPPRDDAGSGYEPDEGF 246
TK+ I W + N P +DD G +E DE F
Sbjct: 357 TKIMHVITWNRSF--KNLPNQDDFGDNFEIDERF 388
>06_02_0339 + 14761074-14761421
Length = 115
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 16 GGRDACLGDSGGPLMCQESGRWYI 87
G R A LG GG + SGRW++
Sbjct: 51 GRRPAVLGSGGGGFLAA-SGRWFL 73
>01_06_1331 +
36373059-36373338,36374190-36374263,36374530-36374699,
36374731-36374822,36375087-36375323,36375922-36375980,
36376462-36376644,36377347-36377437,36377959-36378002,
36378085-36378207
Length = 450
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 1 ARGERGGRDACLGDSGGPLMCQESGRWYIYG 93
A G G RD C G G + ESG+ +G
Sbjct: 72 AAGGDGWRDVCGGGCGFAMAISESGKLLTWG 102
>01_06_1284 + 35994595-35995074
Length = 159
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 193 NTPPRDDAGSGYEPD 237
N PP +DAG G EP+
Sbjct: 139 NYPPLEDAGDGSEPE 153
>01_05_0266 + 20209005-20209137,20209606-20210183
Length = 236
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +1
Query: 1 ARGERGGRDACLGDSGGPLMCQESGRWYIYGVTSNGYGCARAHRPG 138
A G GGR C D+G L + R + + G G A R G
Sbjct: 87 AGGRHGGRGVCFADAGQWLSRRRQQRSGSSRLVAPGRGAASVGRGG 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.139 0.459
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,413,666
Number of Sequences: 37544
Number of extensions: 97708
Number of successful extensions: 229
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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