Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E06
         (257 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    70   2e-13
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    67   1e-12
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    46   5e-06
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    31   0.085
AF078157-11|AAG24070.1|  401|Caenorhabditis elegans Hypothetical...    31   0.11 
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    27   1.4  
AL132952-11|CAB61148.1|  136|Caenorhabditis elegans Hypothetical...    26   3.2  
Z66513-4|CAA91333.1|  409|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AB031233-1|BAA92262.1|  605|Caenorhabditis elegans kinesin like ...    26   4.2  
U80440-2|AAK21469.1|  162|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U80954-4|AAB38097.2|  426|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
 Frame = +1

Query: 16  GGRDACLGDSGGPLMCQ-ESGRWYIYGVTSNGYGCARAHRPGVYTKVSSYIEWIDAVIAN 192
           GG D+C GDSGGP  C+ E G + + GV S G GCA+  +PG+YT V+ Y+ WI A+I N
Sbjct: 203 GGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLSWISAII-N 261

Query: 193 NTP 201
             P
Sbjct: 262 GQP 264


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 30/54 (55%), Positives = 33/54 (61%)
 Frame = +1

Query: 16  GGRDACLGDSGGPLMCQESGRWYIYGVTSNGYGCARAHRPGVYTKVSSYIEWID 177
           G  D+C GDSGGPLMC   G W + GV S G GCAR   PGVY  V S   WI+
Sbjct: 232 GKIDSCQGDSGGPLMCARDGHWELTGVVSWGIGCARPGMPGVYGNVHSASTWIN 285


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
 Frame = +1

Query: 37  GDSGGPLMCQESGRWYIY-GVTSNGYG-----CARAHRPGVYTKVSSYIEWIDAVIANNT 198
           GDSGGPL+  +S   Y+  G+TS G         +   PGVYT++S Y+ WI  VI   +
Sbjct: 227 GDSGGPLLIHKSNGEYVQIGITSYGADGLDGVIDQGKFPGVYTRISKYVPWIQGVIGKTS 286


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 31.5 bits (68), Expect = 0.085
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 1   ARGERGGRDACLGDSGGPLMCQESGRWYIYGVTSN 105
           A+   G   AC+GDSG P+ C  +G+  + G  ++
Sbjct: 200 AKAVTGSSRACMGDSGSPVYCFVNGKRILVGTVAH 234


>AF078157-11|AAG24070.1|  401|Caenorhabditis elegans Hypothetical
           protein F25E5.10 protein.
          Length = 401

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 31  CLGDSGGPLMCQESGRWYIYGVTSNG-YGCARAHRPGVYT 147
           C GD GG  + +  G    YGV  +G Y C +A+R  VYT
Sbjct: 247 CNGDFGGAAVSKFHGSVRAYGVYVDGPYECNKANRRTVYT 286


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 10  ERGGRDACLGDSGGPLMC--QESGRWYIYGVTSNGYGCAR 123
           E   ++ C GDSGG L     +S R +I  + S G  C +
Sbjct: 263 EEEDKNVCSGDSGGGLTFHQSDSAREFIIAIVSYGSDCVQ 302


>AL132952-11|CAB61148.1|  136|Caenorhabditis elegans Hypothetical
           protein Y51H4A.16 protein.
          Length = 136

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 55  LMCQESGRWYIYGVTSNGYGCARAHRPGVYTKVSSYIE 168
           L+ Q+SG+W     + N + C RA  PG +T     I+
Sbjct: 43  LLAQKSGKWARDAESRNTWKCIRA--PGAHTHTGESIK 78


>Z66513-4|CAA91333.1|  409|Caenorhabditis elegans Hypothetical
           protein F54D5.7 protein.
          Length = 409

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 52  PLMCQESGRWYIYGVTSNGYGCARAHRPGVYTKVSSYIEWIDA 180
           P +  E G   + G    GYGCA     G Y  ++  +E +D+
Sbjct: 66  PSLIPEMGSMGLLGAPYQGYGCAGTSTVG-YGLIAREVERVDS 107


>AB031233-1|BAA92262.1|  605|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 605

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 7   GERGGRDACLGDSGGPLMCQESGRWYIYGVTSNGY 111
           G  G  +   GD+ GPL+ +     YIY + S+ Y
Sbjct: 111 GSHGKHNKETGDNVGPLIVKSEKNLYIYIIISDFY 145


>U80440-2|AAK21469.1|  162|Caenorhabditis elegans Hypothetical
           protein T21E12.3 protein.
          Length = 162

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 28  ACLGDSGGPLMCQESGRWYIYGVTSNGYGC 117
           AC GDSGG ++   + R  + GV   G  C
Sbjct: 72  ACTGDSGGGVVQLINDRVTVVGVIYEGVTC 101


>U80954-4|AAB38097.2|  426|Caenorhabditis elegans Hypothetical
           protein T07F8.2 protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 94  VTSNGYGCARAHRPGVYTKVSSYI 165
           V+S+G  C R++R     +V+SY+
Sbjct: 172 VSSDGLNCVRSYRGKAIPRVASYL 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.139    0.459 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,956,266
Number of Sequences: 27780
Number of extensions: 65514
Number of successful extensions: 111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)