Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E04
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...   124   4e-30
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...   120   1e-28
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   1.2  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    26   1.6  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   2.9  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   3.8  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    25   3.8  
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   8.8  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   8.8  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    24   8.8  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    24   8.8  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    24   8.8  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score =  124 bits (299), Expect = 4e-30
 Identities = 62/112 (55%), Positives = 77/112 (68%)
 Frame = +2

Query: 32  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAMPA 211
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI    P 
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 212 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKVLKAQQASIK 367
           E +RL + KKTV+R YGG L    VK RIVRAFLIEEQKIVK    Q +S K
Sbjct: 61  EFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQKLKQLSSQK 112


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score =  120 bits (288), Expect = 1e-28
 Identities = 61/112 (54%), Positives = 77/112 (68%)
 Frame = +2

Query: 32  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAMPA 211
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI    P 
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 212 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKVLKAQQASIK 367
           E +RL + +K V+R YGG L    VK RIVRAFLIEEQKIVK  K +Q S K
Sbjct: 61  EFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK-QKLKQMSQK 111


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 53  RRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR 160
           RR  + N KS+++R    PG  L  +   KPK   R
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKR 279


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 53  RRRLSYNTKSN-QRRIVRTPGGRLVY 127
           R+  SY T +   +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 217 FSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSATG 357
           FSS L    + +R ++  L++     HRQ F+  RTE+  + ++A+G
Sbjct: 22  FSSTLSNPLTYSRSYKRVLARWGIRVHRQRFVSPRTEE-AAARTASG 67


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 147 LGFLTYWYTKRPPGVRTILL 88
           +GFL Y+Y K P G R  +L
Sbjct: 133 VGFLPYFYVKAPVGFRPEML 152


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 4   NSARGKKLQNGAAAYIQTTFVLQHKVKPKENSTN 105
           N  +  KLQN    Y+    + Q KV PK   TN
Sbjct: 498 NEEKILKLQNMPGTYVDKWTLDQEKVMPKNLKTN 531


>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 163

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 179 KLRGIQPAMPAERSRLCYRKKTVKRVYGG 265
           KL+ + PA+  +  R   +KK  +++ GG
Sbjct: 75  KLKSLPPALKKKIERQLQKKKEAEKIEGG 103


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 230 YRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKVLK 346
           +R+K   R+ G ++C  C+K+     F+   Q  +KV +
Sbjct: 76  FRRKHHCRICGKIICKYCLKE--APGFIFRLQGSIKVCR 112


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
 Frame = +2

Query: 128 QYVKKPKKIPRCGQCKSKLRG-------IQPAMPAERSR---LCYRKKTVKRVYG 262
           Q + K KK P C  C SK          I+ + P ++S+   LC R   V R YG
Sbjct: 659 QKILKLKKTPICRWCHSKRSSEWFVAPPIEESSPKDKSKIVALCQRCGYVWRYYG 713


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = +1

Query: 187  RYPARDARRAFSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSATGQHK 366
            R   R+  + F + L      AR   CS +   E  H Q F   +    E   + +  H+
Sbjct: 1008 RNTIRNIVKVFLTTLGACGDVARNVTCSSTPNNETIHDQLFAVSKQISNELLPTTSSYHE 1067

Query: 367  VW 372
            +W
Sbjct: 1068 IW 1069


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 165 PHLGIFLGFLTYWYTKRPPGVRT 97
           PH+G +LG L  W   +    RT
Sbjct: 26  PHIGNYLGSLKQWVQLQEEAART 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,414,689
Number of Sequences: 5004
Number of extensions: 25358
Number of successful extensions: 77
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)