Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E04
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 130 3e-31
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 129 6e-31
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 129 6e-31
01_05_0589 + 23459847-23460344,23460493-23461296 28 2.0
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 27 4.7
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344... 27 6.2
03_04_0153 + 17745473-17745889,17746120-17746272,17747307-177475... 26 8.2
02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225 26 8.2
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 130 bits (315), Expect = 3e-31
Identities = 69/116 (59%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Frame = +2
Query: 32 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAMPA 211
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++GI PA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 212 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV-KVLKAQQASIKS 370
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIV KVLK Q+ KS
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVKKVLKIQKTKDKS 116
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 129 bits (312), Expect = 6e-31
Identities = 68/116 (58%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Frame = +2
Query: 32 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAMPA 211
MVQRLT+R+R SY TKSNQ R+V+TPGG+LVYQY KK P+C K++GI PA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 212 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV-KVLKAQQASIKS 370
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIV KVLK Q+ KS
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVKKVLKIQKTKDKS 116
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 129 bits (312), Expect = 6e-31
Identities = 68/116 (58%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Frame = +2
Query: 32 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAMPA 211
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++GI PA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 212 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV-KVLKAQQASIKS 370
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIV KVLK Q+ K+
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVKKVLKIQKTKDKT 116
>01_05_0589 + 23459847-23460344,23460493-23461296
Length = 433
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 225 RRERSAGIAGWIPRSLLLH*PHLGIFL 145
R +R I GW P+ L+L+ P +G+F+
Sbjct: 286 RGDRGRTIRGWAPQVLVLNHPAVGVFV 312
>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 161 CGQCKSKLRGIQPAMPAERSRLCYRKKTVKRVYGGVLCHK 280
CG+ + L+ ++ ++PA C R+ K +YG +LC++
Sbjct: 1091 CGEVIN-LKELRSSLPALECAQCERQYHAKCIYGKLLCNE 1129
>06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,
3444823-3444900,3444980-3445075,3445363-3445405,
3445498-3445571,3445693-3445781,3445887-3445935,
3446171-3446227,3446309-3446425,3448633-3448698,
3449140-3449196,3449271-3449363,3449515-3449662,
3449753-3449902,3449979-3450181,3450319-3450438,
3450530-3450694,3450784-3450870,3450951-3451100,
3451225-3451365,3451399-3451569,3452015-3452091,
3452175-3452415,3452495-3452758,3452913-3453000,
3453099-3453481
Length = 1170
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 31 NGAAAYIQTTFVLQHKVKPKENSTNSWRSLGIPV 132
+GAA +IQT L K + + +T W +GI +
Sbjct: 1120 SGAAEHIQTGTNLLQKARFLQKNTRKWTCIGIVI 1153
>03_04_0153 +
17745473-17745889,17746120-17746272,17747307-17747512,
17747752-17747959
Length = 327
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 232 PQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSA 351
P ED R W +++ + A L+R E+ +S +A
Sbjct: 80 PSEDEAQREWEAEMARRLKEAEEMEELERTAEELQSQAAA 119
>02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225
Length = 489
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 228 QRRERSAGIAGWIPRSLLLH*PHLGIFL 145
+ +ER +A W P+ L+L P +G+FL
Sbjct: 354 ETKERGV-LASWCPQELVLSHPSVGLFL 380
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,654,647
Number of Sequences: 37544
Number of extensions: 182558
Number of successful extensions: 508
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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