Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E04
         (373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical...   122   6e-29
Z29095-12|CAB54287.2|  414|Caenorhabditis elegans Hypothetical p...    30   0.46 
Z29095-11|CAB54286.2|  426|Caenorhabditis elegans Hypothetical p...    30   0.46 
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    30   0.61 
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    30   0.61 
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical...    27   5.7  
Z81015-2|CAB02660.1|  411|Caenorhabditis elegans Hypothetical pr...    26   9.9  
Z73422-14|CAD37351.1|  441|Caenorhabditis elegans Hypothetical p...    26   9.9  
Z73422-13|CAA97773.2|  443|Caenorhabditis elegans Hypothetical p...    26   9.9  
Z70307-16|CAC42262.2|  441|Caenorhabditis elegans Hypothetical p...    26   9.9  
Z70307-15|CAA94342.2|  443|Caenorhabditis elegans Hypothetical p...    26   9.9  
Z70307-14|CAA94338.2|  409|Caenorhabditis elegans Hypothetical p...    26   9.9  
U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine rece...    26   9.9  
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr...    26   9.9  

>CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical
           protein C42C1.14 protein.
          Length = 110

 Score =  122 bits (295), Expect = 6e-29
 Identities = 62/109 (56%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
 Frame = +2

Query: 32  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAMPA 211
           M  R+T+RRRLSYNT SN++R+V+TPGGRLV QY+KK  +IP+C     KL GI PA P 
Sbjct: 1   MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPI 60

Query: 212 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV-KVLKAQQ 355
               L   ++TV R YGG L    VK+RI RAFL+EEQKIV KV+K Q+
Sbjct: 61  ALRLLKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQKIVNKVIKHQK 109


>Z29095-12|CAB54287.2|  414|Caenorhabditis elegans Hypothetical
           protein R10E11.3b protein.
          Length = 414

 Score = 30.3 bits (65), Expect = 0.46
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 277 VTENTSINALHCLLAVAETRTLCG 206
           V +NTSI+  HCL   +ET TLCG
Sbjct: 219 VEQNTSIS--HCLRVFSETETLCG 240


>Z29095-11|CAB54286.2|  426|Caenorhabditis elegans Hypothetical
           protein R10E11.3a protein.
          Length = 426

 Score = 30.3 bits (65), Expect = 0.46
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 277 VTENTSINALHCLLAVAETRTLCG 206
           V +NTSI+  HCL   +ET TLCG
Sbjct: 231 VEQNTSIS--HCLRVFSETETLCG 252


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 74   TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAMPAERSRLCYRKKTVKR 253
            +K   R++V      L YQ++ K  + PR  +   +L G+   + A  S  C R  T++R
Sbjct: 2336 SKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVNTLLANNSETCRRNLTIQR 2395


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 74   TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAMPAERSRLCYRKKTVKR 253
            +K   R++V      L YQ++ K  + PR  +   +L G+   + A  S  C R  T++R
Sbjct: 2339 SKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVNTLLANNSETCRRNLTIQR 2398


>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
           protein C34F6.9 protein.
          Length = 1181

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
 Frame = +2

Query: 128 QYVKKPKKIPRCGQCKSKLRGIQPAMPAERSRLCYRKKTVKRVYGG--VLCHKCVKQRIV 301
           +YVK+  KIP+    K   + ++P  P +     Y  +T+     G  VLC     + +V
Sbjct: 529 KYVKQAAKIPQPAVLKEDPQAVKPRPPKKDVLAGYSVETIFLALTGETVLCRSHSLEDLV 588

Query: 302 RAFLIEEQKIVKVLK--AQQASIKSG 373
           R    E   +  +L    Q++   SG
Sbjct: 589 RLKQEELDAVTSILNNGVQKSQCDSG 614


>Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical
           protein D1081.4 protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 360 LACCAFRTFTIFCSSIKKALTMRCFTHL*QRTPP*TRFTVFLR*QRRER 214
           L+CCA ++  + C ++++     CF  +  RT P      F   +RRER
Sbjct: 142 LSCCASKS-NMECCALREEEVRACFHEILLRTRPNLNIQGFELRKRRER 189


>AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical
           protein Y39B6A.33 protein.
          Length = 438

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +2

Query: 32  MVQRLTFRRRLSYN--TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAM 205
           +V +LT +++ +    TK+  +  V  P      + +KKP K+PR     +  +G + A 
Sbjct: 67  VVPKLTKKQQAALEKITKNITQEHVTLPKPSTTSKILKKPAKLPRGNAILALKKGPKAAA 126

Query: 206 PAERSR 223
           PA + +
Sbjct: 127 PAAKKK 132


>Z81015-2|CAB02660.1|  411|Caenorhabditis elegans Hypothetical
           protein C11E4.3 protein.
          Length = 411

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 32  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 145
           MV+R+  RR + Y T+ N  +      GR+V+  +K P
Sbjct: 210 MVRRVVMRRGICYQTRKNVNQSEADDIGRIVFS-LKAP 246


>Z73422-14|CAD37351.1|  441|Caenorhabditis elegans Hypothetical
           protein C39E9.14b protein.
          Length = 441

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 217 FSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPK 345
           FS+LL ++         ++SQ  +AA  Q+ LDR  +  +SPK
Sbjct: 391 FSNLLNKDKPSKVSSPSTVSQPMDAAATQAQLDRLLKSAQSPK 433


>Z73422-13|CAA97773.2|  443|Caenorhabditis elegans Hypothetical
           protein C39E9.14a protein.
          Length = 443

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 217 FSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPK 345
           FS+LL ++         ++SQ  +AA  Q+ LDR  +  +SPK
Sbjct: 393 FSNLLNKDKPSKVSSPSTVSQPMDAAATQAQLDRLLKSAQSPK 435


>Z70307-16|CAC42262.2|  441|Caenorhabditis elegans Hypothetical
           protein C39E9.14b protein.
          Length = 441

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 217 FSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPK 345
           FS+LL ++         ++SQ  +AA  Q+ LDR  +  +SPK
Sbjct: 391 FSNLLNKDKPSKVSSPSTVSQPMDAAATQAQLDRLLKSAQSPK 433


>Z70307-15|CAA94342.2|  443|Caenorhabditis elegans Hypothetical
           protein C39E9.14a protein.
          Length = 443

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 217 FSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPK 345
           FS+LL ++         ++SQ  +AA  Q+ LDR  +  +SPK
Sbjct: 393 FSNLLNKDKPSKVSSPSTVSQPMDAAATQAQLDRLLKSAQSPK 435


>Z70307-14|CAA94338.2|  409|Caenorhabditis elegans Hypothetical
           protein C39E9.12 protein.
          Length = 409

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 313 QESSDDALLHAFVTENTSINALHCLLAVAETRTLCGHRGLD 191
           +E   +     FV ENT  NA+  +L       LCG  G+D
Sbjct: 83  EEEETENTTGRFVHENTPTNAVAVVLDDDLRNRLCGSLGID 123


>U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine
           receptor, class h protein231 protein.
          Length = 338

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 132 YWYTKRPPGVRTI 94
           YW+TK+PP VR +
Sbjct: 304 YWFTKKPPIVRVL 316


>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
            F58G4.1 protein.
          Length = 1974

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +1

Query: 238  EDSEARLWRCSLSQMREAAHRQSFLDRRTEDRES 339
            ED+EA+L  C+L+++++  H Q    +RT D+E+
Sbjct: 1302 EDAEAQL--CALNRIKQQQHSQLEELKRTLDQET 1333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,995,042
Number of Sequences: 27780
Number of extensions: 148039
Number of successful extensions: 452
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)