Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E04
(373 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 25 0.38
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 22 2.7
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 3.5
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 3.5
DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse tr... 21 6.2
DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse tr... 21 6.2
AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II ... 21 6.2
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 20 8.2
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 20 8.2
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 20 8.2
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 20 8.2
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 20 8.2
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 20 8.2
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 20 8.2
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 20 8.2
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 24.6 bits (51), Expect = 0.38
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 95 IVRTPGGRLVYQYVKKPKKI 154
+ + G RLVYQ+V PK I
Sbjct: 527 LAKVDGQRLVYQFVDVPKDI 546
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 21.8 bits (44), Expect = 2.7
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -3
Query: 92 SFGLTLCCKTNVV 54
+F T+CCKT ++
Sbjct: 338 AFKQTICCKTRII 350
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.4 bits (43), Expect = 3.5
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +2
Query: 11 HEAKSYKMVQRLTFRRRLSYNTKSNQRRIVRTPGGR 118
HE KM+ RR ++R R+PG R
Sbjct: 53 HERLMKKMILEYELRRIREIEKLGSERSKSRSPGSR 88
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.4 bits (43), Expect = 3.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 248 SLSSCGSRDENALRAS 201
S+S GSRDE++ R S
Sbjct: 1402 SISRAGSRDEDSTRDS 1417
>DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse
transcriptase protein.
Length = 127
Score = 20.6 bits (41), Expect = 6.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 284 VKQRIVRAFLIEEQKIVKV 340
+ + I+R FLI +QK K+
Sbjct: 73 ITRYIIRMFLISQQKTSKL 91
>DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse
transcriptase protein.
Length = 110
Score = 20.6 bits (41), Expect = 6.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 284 VKQRIVRAFLIEEQKIVKV 340
+ + I+R FLI +QK K+
Sbjct: 56 ITRYIIRMFLISQQKTSKL 74
>AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II
protein.
Length = 190
Score = 20.6 bits (41), Expect = 6.2
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = -1
Query: 256 NALHCLLAVAETRTLCGHRGL 194
+A HC+ + E+ C H G+
Sbjct: 10 DASHCIQQILESVHHCHHNGV 30
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 20.2 bits (40), Expect = 8.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 99 YELLEVAWYTSMLR 140
Y LLEV W +M R
Sbjct: 107 YRLLEVDWLKNMWR 120
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.2 bits (40), Expect = 8.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 242 SSCGSRDENALRASRAGYR 186
SSC SR E++ R YR
Sbjct: 228 SSCHSRYEDSRHEDRNSYR 246
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.2 bits (40), Expect = 8.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 242 SSCGSRDENALRASRAGYR 186
SSC SR E++ R YR
Sbjct: 228 SSCHSRYEDSRHEDRNSYR 246
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.2 bits (40), Expect = 8.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 242 SSCGSRDENALRASRAGYR 186
SSC SR E++ R YR
Sbjct: 228 SSCHSRYEDSRHEDRNSYR 246
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.2 bits (40), Expect = 8.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 242 SSCGSRDENALRASRAGYR 186
SSC SR E++ R YR
Sbjct: 228 SSCHSRYEDSRHEDRNSYR 246
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 20.2 bits (40), Expect = 8.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 242 SSCGSRDENALRASRAGYR 186
SSC SR E++ R YR
Sbjct: 228 SSCHSRYEDSRHEDRNSYR 246
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 20.2 bits (40), Expect = 8.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 242 SSCGSRDENALRASRAGYR 186
SSC SR E++ R YR
Sbjct: 228 SSCHSRYEDSRHEDRNSYR 246
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 20.2 bits (40), Expect = 8.2
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -2
Query: 108 GVRTILLWFDFVL*DKRRLNVSRCTIL 28
G+R +W D + R LN + C L
Sbjct: 28 GLRWFEIWRDSLPTKMRELNATACAAL 54
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,776
Number of Sequences: 438
Number of extensions: 1809
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 8928360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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