Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E03
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   105   4e-24
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   2.7  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   2.7  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   3.5  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   4.7  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   4.7  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   4.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    24   8.1  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  105 bits (251), Expect = 4e-24
 Identities = 47/74 (63%), Positives = 58/74 (78%)
 Frame = +2

Query: 191 LFEKITKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 370
           LF    ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK 
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85

Query: 371 TAKGLFKILEKYRP 412
           TA  +FK+L KYRP
Sbjct: 86  TATQVFKLLNKYRP 99


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 299 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 400
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 312 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 410
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 309 NTAF*RWMRIYFGHRTKRDRSLVGWMSWPIAKF--FVIFSNR 190
           N  F R +R+YF    + DRSL  +  W   ++  F + + R
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQWLFRRYGDFAVLNTR 212


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 371 TAKGLFKILEKYR 409
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 175 EDCKPSIREDNKELCY 222
           E CK  + + NKELCY
Sbjct: 947 EACKACLLQGNKELCY 962


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 191 LFEKITKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVL 310
           L+EKIT + A+  +++P   L+ +++    + ++ Q AVL
Sbjct: 425 LYEKITNHMALAMEVEP---LNEWLQLIHILLLEAQTAVL 461


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 339 STSSPRH*IKPQPKVCSRSWRNTGH 413
           ST SP+H +  QP+  + S  N  H
Sbjct: 826 STKSPQHKLSDQPRSRNNSISNVSH 850


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,604
Number of Sequences: 5004
Number of extensions: 28983
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)