Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E03
(413 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 113 5e-26
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 113 5e-26
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 113 6e-26
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 95 2e-20
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 31 0.33
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 31 0.33
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 31 0.33
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 31 0.33
Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z77133-2|CAB00864.2| 664|Caenorhabditis elegans Hypothetical pr... 26 9.4
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 113 bits (272), Expect = 5e-26
Identities = 49/74 (66%), Positives = 61/74 (82%)
Frame = +2
Query: 191 LFEKITKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 370
LFEK +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 371 TAKGLFKILEKYRP 412
+A+ FK+L+KYRP
Sbjct: 92 SARQAFKLLDKYRP 105
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 113 bits (272), Expect = 5e-26
Identities = 49/74 (66%), Positives = 61/74 (82%)
Frame = +2
Query: 191 LFEKITKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 370
LFEK +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 371 TAKGLFKILEKYRP 412
+A+ FK+L+KYRP
Sbjct: 92 SARQAFKLLDKYRP 105
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 113 bits (271), Expect = 6e-26
Identities = 49/74 (66%), Positives = 61/74 (82%)
Frame = +2
Query: 191 LFEKITKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 370
LFEK +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194
Query: 371 TAKGLFKILEKYRP 412
+A+ FK+L+KYRP
Sbjct: 195 SARQAFKLLDKYRP 208
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 95.1 bits (226), Expect = 2e-20
Identities = 41/58 (70%), Positives = 49/58 (84%)
Frame = +2
Query: 191 LFEKITKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 364
LFEK +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 31.1 bits (67), Expect = 0.33
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +1
Query: 121 DREKSSGRSTCGEES*AQEDCKPSIREDNKELCYWPGHPANQRSIPFRAMAEIYSHPASK 300
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 31 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 88
Query: 301 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 396
G AS+Q++ A+ P++ + + QD+
Sbjct: 89 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 120
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.33
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +1
Query: 121 DREKSSGRSTCGEES*AQEDCKPSIREDNKELCYWPGHPANQRSIPFRAMAEIYSHPASK 300
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 301 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 396
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 31.1 bits (67), Expect = 0.33
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +1
Query: 121 DREKSSGRSTCGEES*AQEDCKPSIREDNKELCYWPGHPANQRSIPFRAMAEIYSHPASK 300
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 301 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 396
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.33
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +1
Query: 121 DREKSSGRSTCGEES*AQEDCKPSIREDNKELCYWPGHPANQRSIPFRAMAEIYSHPASK 300
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 301 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 396
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical
protein W05B10.5 protein.
Length = 325
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -3
Query: 246 LVGWMSWPIAKF--FVIFSNRGFTIF 175
LVGW +W I F ++ SNR F +F
Sbjct: 97 LVGWFAWCIGPFSQVLLTSNRIFAVF 122
>Z77133-2|CAB00864.2| 664|Caenorhabditis elegans Hypothetical
protein K03A11.4 protein.
Length = 664
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +2
Query: 236 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 412
+PT D+S +++ ++ + + Q R +P ++ FT +D + K+ E RP
Sbjct: 188 KPTIDISSLMQFDVFVILLDSLSYSQGRRALPRTLSYFTNHMDGVIFPYVNKVGENSRP 246
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,943,127
Number of Sequences: 27780
Number of extensions: 161135
Number of successful extensions: 402
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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