Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E03
(413 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 0.59
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 0.59
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 22 3.2
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 22 3.2
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 22 3.2
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 22 3.2
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 22 3.2
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 4.2
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 21 7.3
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 20 9.6
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 20 9.6
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 0.59
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 208 KELCYWPGHPANQR-SIPFRAMAEIYSHPASKGCVTASSQSAAA 336
++ CY+P HP+ Q S +S ASK ++ SS + A
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLADGA 428
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 0.59
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 208 KELCYWPGHPANQR-SIPFRAMAEIYSHPASKGCVTASSQSAAA 336
++ CY+P HP+ Q S +S ASK ++ SS + A
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLADGA 428
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 21.8 bits (44), Expect = 3.2
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 178 DCKPSIREDNKELCYWPGHPANQ-RSIPFRAM 270
DC I ++ L YW G+ AN R P +A+
Sbjct: 58 DCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 3.2
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +1
Query: 169 AQEDCKPSIREDNKEL 216
+Q+DC +I+E+N +L
Sbjct: 422 SQDDCLKAIKENNADL 437
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 3.2
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +1
Query: 169 AQEDCKPSIREDNKEL 216
+Q+DC +I+E+N +L
Sbjct: 422 SQDDCLKAIKENNADL 437
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 21.8 bits (44), Expect = 3.2
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 178 DCKPSIREDNKELCYWPGHPANQ-RSIPFRAM 270
DC I ++ L YW G+ AN R P +A+
Sbjct: 58 DCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 3.2
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +1
Query: 169 AQEDCKPSIREDNKEL 216
+Q+DC +I+E+N +L
Sbjct: 422 SQDDCLKAIKENNADL 437
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 4.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 280 YSHPASKGCVTASSQSAAANQPV 348
Y H S+G V S +A N PV
Sbjct: 1831 YDHYGSRGSVGRRSVGSARNIPV 1853
Score = 20.6 bits (41), Expect = 7.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 299 KAVLQRRLKVPPPINQFTQT 358
+ L+ ++ VPP I QF+ T
Sbjct: 572 RGTLEVQVMVPPTIQQFSFT 591
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 20.6 bits (41), Expect = 7.3
Identities = 5/8 (62%), Positives = 8/8 (100%)
Frame = -1
Query: 254 IDLWLAGC 231
+D+W+AGC
Sbjct: 262 LDVWMAGC 269
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 20.2 bits (40), Expect = 9.6
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -2
Query: 244 GWLDVLANSKVLCYL 200
GW+ LA V C+L
Sbjct: 368 GWIHHLARHAVACFL 382
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 20.2 bits (40), Expect = 9.6
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 120 FFLGFFCTILNGF*LSDLTATNRYVTYSEHQNYRPS 13
F GF T++ L+ +R S+H RPS
Sbjct: 726 FAAGFCFTVVYAALLTKTNRISRIFNASKHSAKRPS 761
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,840
Number of Sequences: 438
Number of extensions: 2013
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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