Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E02
         (256 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0227 - 14485676-14487316                                         28   0.90 
09_01_0154 + 2298432-2299415                                           26   4.8  

>08_02_0227 - 14485676-14487316
          Length = 546

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +2

Query: 2   LELXVDTPWGXPPXXFWGXPKMVWQNTFPVXTXVAHMTYCMRFGVNYILNNGCSKEKE 175
           LE  +D P G  P      P+  +    P      H   C  FGV ++   GCS ++E
Sbjct: 131 LECQIDAPAGAGPLSSSSPPRYTYAMPGPEYNLRLHHLPCEDFGVLHL--TGCSLKEE 186


>09_01_0154 + 2298432-2299415
          Length = 327

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 224 NITMFAPICLIVL*YMFLFL 165
           NI +FAPI L++  + F+FL
Sbjct: 30  NIRLFAPIFLLIFCHTFIFL 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,766,653
Number of Sequences: 37544
Number of extensions: 84981
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)