Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E02
         (256 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42438-1|AAN84876.1|  459|Caenorhabditis elegans Maternal effect...    27   2.4  
AF016224-1|AAC27121.1|  459|Caenorhabditis elegans WD-40 repeat ...    27   2.4  
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei...    26   4.3  
Z47357-7|CAD90185.1|  191|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z47357-6|CAA87426.2|  187|Caenorhabditis elegans Hypothetical pr...    25   7.4  

>U42438-1|AAN84876.1|  459|Caenorhabditis elegans Maternal effect
           sterile protein 6 protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = +2

Query: 119 CMRF--GVNYILNNGCSKEK 172
           C+RF  G NY L+ GC  EK
Sbjct: 312 CIRFLIGTNYALSKGCGNEK 331


>AF016224-1|AAC27121.1|  459|Caenorhabditis elegans WD-40 repeat
           protein protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = +2

Query: 119 CMRF--GVNYILNNGCSKEK 172
           C+RF  G NY L+ GC  EK
Sbjct: 312 CIRFLIGTNYALSKGCGNEK 331


>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
           protein.
          Length = 2427

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 79  HFSXXHXSRAYDILYAIWC*LYFK 150
           HF+  H  +  + L+A+W  L+FK
Sbjct: 131 HFASEHIKKRLEELHALWDKLFFK 154


>Z47357-7|CAD90185.1|  191|Caenorhabditis elegans Hypothetical
           protein ZK1128.8b protein.
          Length = 191

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 162 LQPLFKI*LTPNRIQYVICATXVXTGKVF 76
           + P F+  L PN++Q+V+C   + + + F
Sbjct: 22  ISPKFRKLLVPNKMQHVLCTGNLCSRETF 50


>Z47357-6|CAA87426.2|  187|Caenorhabditis elegans Hypothetical
           protein ZK1128.8a protein.
          Length = 187

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 162 LQPLFKI*LTPNRIQYVICATXVXTGKVF 76
           + P F+  L PN++Q+V+C   + + + F
Sbjct: 18  ISPKFRKLLVPNKMQHVLCTGNLCSRETF 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,018,972
Number of Sequences: 27780
Number of extensions: 79605
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)