Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E01
         (267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   1.8  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    24   3.1  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    23   5.5  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   7.2  
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    23   7.2  

>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = +3

Query: 228 FQPFILFVAYVN 263
           F+PF++F+AYVN
Sbjct: 446 FRPFLIFLAYVN 457


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 211 FSITAPFNHLFYLWLMSIM 267
           F++T+   +LF+LW++S +
Sbjct: 278 FTLTSGHGYLFWLWILSAL 296


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = +2

Query: 107 VMHSHAPPLHKG--AWLI 154
           VMHS+ PPL+    AW+I
Sbjct: 476 VMHSYDPPLYNDTRAWMI 493


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 75  RYISNGSYNTASCIAMRPLYTKAHGSL 155
           +Y+S G  + A   A +P Y +A  SL
Sbjct: 445 KYLSEGKNSKAKYTAKQPSYDRAGSSL 471


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 173 MDVKVKSDAPWHFLVLLHLSTIY 241
           +DV+  S   W+FL L  L ++Y
Sbjct: 166 LDVQWVSSISWYFLNLFGLKSVY 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,123,790
Number of Sequences: 5004
Number of extensions: 19196
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)