Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E01
         (267 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0964 - 23070624-23070860,23070970-23071250,23071353-23072124     28   1.2  
03_02_0244 + 6750973-6751041,6751216-6751258,6751349-6751410,675...    27   2.7  
09_04_0275 + 16302086-16303721,16304182-16304734,16305491-163055...    26   3.6  
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720...    25   6.3  
04_01_0211 + 2649405-2649950,2650100-2650285,2650367-2650583,265...    25   8.3  

>08_02_0964 - 23070624-23070860,23070970-23071250,23071353-23072124
          Length = 429

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 258 HKPQIK*MVERCSNTKKCHGASD 190
           + P+++ MV R S  K CHG++D
Sbjct: 387 YSPRMRRMVVRISQMKNCHGSAD 409


>03_02_0244 +
           6750973-6751041,6751216-6751258,6751349-6751410,
           6751779-6751875,6752380-6752450,6752503-6752586,
           6753040-6753294
          Length = 226

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 9/54 (16%)
 Frame = +2

Query: 113 HSHAPP-----LHKGAW-LITARQNTMDVKVKSDA---PWHFLVLLHLSTIYFI 247
           +S+ PP     L +G + L++AR +++   VK DA   P   LV  HL+T+YF+
Sbjct: 20  YSYQPPEKHQDLVRGVFQLLSARPDSVSNFVKVDAIFGPGAKLVYKHLATLYFV 73


>09_04_0275 +
           16302086-16303721,16304182-16304734,16305491-16305519,
           16305639-16305897,16305969-16306110
          Length = 872

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 201 GASDFTLTSIVFCLAVMSHAPLCRGGAW 118
           G SD  + ++   +AVMS   LC GG W
Sbjct: 846 GGSDVGVQTVTMLVAVMSTRSLC-GGCW 872


>11_05_0004 -
           18269416-18269473,18270319-18270509,18271061-18272004,
           18272083-18272254,18272332-18272407,18272498-18272617,
           18272795-18272959,18273048-18273138,18273673-18273757,
           18273873-18274043,18274151-18274207,18274290-18274385,
           18275223-18275365,18275464-18275530
          Length = 811

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 137 KGAWLITARQNTMDVKVKSDAPWHFLVLLHLSTIYFICGL 256
           K  W++    N  D+ +  D PW F  +    T Y  C L
Sbjct: 770 KKEWMVVYTDNEGDMMLVGDDPWIFAPVQPDGTGYLSCYL 809


>04_01_0211 +
           2649405-2649950,2650100-2650285,2650367-2650583,
           2650705-2650781,2650884-2650892
          Length = 344

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 104 CVMHSHAPPLHKGAWLIT 157
           C   SHA  L  G WL+T
Sbjct: 304 CSRESHAKQLSSGGWLVT 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,516,845
Number of Sequences: 37544
Number of extensions: 135909
Number of successful extensions: 243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)