Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D22
         (282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...   129   9e-32
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    27   0.67 
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    27   0.67 
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   2.1  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   2.7  
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po...    24   4.7  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    23   6.3  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    23   6.3  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    23   6.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    23   6.3  

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score =  129 bits (311), Expect = 9e-32
 Identities = 55/77 (71%), Positives = 65/77 (84%)
 Frame = +1

Query: 22  MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 201
           M LA+DLL+PS  SE RKHKLK+LV  P S+FMDVKCPGC+ ITTVFSHAQ VV+C  C+
Sbjct: 1   MVLAVDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCA 60

Query: 202 TILCQPTGGRARLTEGC 252
           ++LCQPTGG+ARL EGC
Sbjct: 61  SVLCQPTGGKARLMEGC 77


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 0.67
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 105 WMWYQSLQLMFPPLRRGGRVQ 43
           W+W+ +L L+FP  +   +V+
Sbjct: 459 WLWFMALMLLFPSYQNPNKVE 479


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 0.67
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 108 VWMWYQSLQLMFPPLRR 58
           VWMW+  L L+FP  ++
Sbjct: 459 VWMWFMILMLLFPQYQK 475


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 180 NPLCVAKYRSYFVATGTF 127
           +P  + KY+ YFV T TF
Sbjct: 23  HPCSILKYKVYFVTTDTF 40


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 189 AYNNPLCV-AKYRSYFVATGTFDIHEIRVWMWYQSL 85
           ++ NP  + AK+RS+     T D  ++R W+ + S+
Sbjct: 2   SFQNPSYINAKHRSFLQPKDTQDSQDLRNWVSHSSV 37


>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 227 PPVGWQRIVEHPAHTTTL 174
           PPVGW+ IVE   ++  L
Sbjct: 102 PPVGWEPIVEESPNSQHL 119


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +1

Query: 55  PASERRKHKLKRLVPHPNSYFMDVKCPGCY 144
           P     K       P  N   MD+ CP CY
Sbjct: 82  PVKRAVKEAWDSFEPLSNDQLMDLTCPICY 111


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 248 PSVNLARPPVGWQRIVEHPAHTTT 177
           PS + ++P + W    E  A TTT
Sbjct: 307 PSYSTSQPTISWDAASESSAGTTT 330


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 190 AGCSTILCQPTGGRAR 237
           A C T LC+  G RAR
Sbjct: 167 ANCFTFLCRALGSRAR 182


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 268  CFLLNDILPLI*LGHQWAGKGLW 200
            C+LL DI+P     H    +GLW
Sbjct: 1288 CYLLPDIIPCALSLHNAEFQGLW 1310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,257,123
Number of Sequences: 5004
Number of extensions: 23654
Number of successful extensions: 43
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)