Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D22
(282 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719... 124 1e-29
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 59 6e-10
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590 57 2e-09
04_04_0303 + 24269467-24270741 31 0.10
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306... 27 1.7
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668... 27 2.2
12_02_1074 - 25849280-25849324,25849435-25849506,25849601-258496... 27 3.0
04_03_0126 + 11524567-11524967,11525113-11525647,11525669-11526043 27 3.0
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 27 3.0
04_03_0116 - 11448012-11448525,11448693-11448763,11449139-114494... 26 3.9
06_03_0784 - 24557089-24557198,24557296-24560725 26 5.2
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 26 5.2
06_01_1204 + 10397131-10398498 26 5.2
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345... 25 6.8
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422... 25 6.8
06_02_0005 + 10502478-10503446 25 6.8
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250... 25 6.8
04_04_0029 + 22258957-22259207,22260067-22260286 25 9.0
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 25 9.0
>04_03_0487 +
16471538-16471540,16471694-16471795,16471880-16471908,
16472619-16472745
Length = 86
Score = 124 bits (299), Expect = 1e-29
Identities = 54/79 (68%), Positives = 61/79 (77%)
Frame = +1
Query: 34 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 213
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66
Query: 214 QPTGGRARLTEGCHLEENS 270
QPTGG+ARLTEGC S
Sbjct: 67 QPTGGKARLTEGCSFRRKS 85
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 58.8 bits (136), Expect = 6e-10
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = +1
Query: 34 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 171
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ ++ F A
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52
>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
Length = 45
Score = 56.8 bits (131), Expect = 2e-09
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +1
Query: 34 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 150
IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ +
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45
>04_04_0303 + 24269467-24270741
Length = 424
Score = 31.5 bits (68), Expect = 0.10
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +1
Query: 31 AIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 210
A+ LLHP L ++PH S +D CP Y+I ++ RVV C+++
Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197
Query: 211 CQPTGGRA 234
C TG A
Sbjct: 198 CSATGAGA 205
>02_01_0418 -
3059575-3061279,3061915-3061973,3064270-3064353,
3064395-3064559
Length = 670
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 13 AVTMPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSH 168
AV L L+ + ASERRK K+ L N + + YK V SH
Sbjct: 51 AVPRSLEAKLMVKTLASERRKRKVNNLERKGNKVDVSIAANDYYKPRAVKSH 102
>03_02_0238 -
6687334-6687421,6687456-6687512,6688266-6688351,
6688410-6688589
Length = 136
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 139 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 231
CYKI+ ++SH Q ++ C IL +PTG R
Sbjct: 96 CYKISKIYSHGQSLL----CLDIL-RPTGRR 121
>12_02_1074 -
25849280-25849324,25849435-25849506,25849601-25849663,
25849756-25849865,25850648-25850761,25851601-25851681,
25851736-25851850
Length = 199
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 172 QRVVVCAGCSTILCQPTGGRARLTEGCHLEENSIKS 279
Q +VC GC IL P G + CH ++ S
Sbjct: 2 QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPS 37
>04_03_0126 + 11524567-11524967,11525113-11525647,11525669-11526043
Length = 436
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -2
Query: 251 HPSVNLARPPVGWQRIVEHPAHTTTLCAWLNT 156
HPS GW ++E AH + WL T
Sbjct: 318 HPSTAAFLSHCGWSSVLESMAHGVPVIGWLLT 349
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 16 VTMPLAIDLLHPSPASERRKHK 81
+T P DL + +PA++RR+HK
Sbjct: 98 LTQPFPADLPNNAPAAQRREHK 119
>04_03_0116 -
11448012-11448525,11448693-11448763,11449139-11449421,
11449520-11449672,11449750-11450219,11451470-11451631,
11451718-11451987,11452229-11452633
Length = 775
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -2
Query: 251 HPSVNLARPPVGWQRIVEHPAHTTTLCAW-LNTVVI 147
H S+ GW ++E AH + AW LN V+
Sbjct: 655 HASIGTFLSHYGWNSVLESTAHGVPVVAWPLNAQVL 690
>06_03_0784 - 24557089-24557198,24557296-24560725
Length = 1179
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 46 HPSPASERRKHKLKRLVPHPNSYFMDVK 129
HP S H L+ L HP+S FMD +
Sbjct: 627 HPLSDSLCSLHHLRMLSVHPHSCFMDTR 654
>06_03_0783 -
24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 46 HPSPASERRKHKLKRLVPHPNSYFMD 123
HP P S + L+ L HP+S FMD
Sbjct: 662 HPLPESLCSLYHLQMLSVHPHSCFMD 687
>06_01_1204 + 10397131-10398498
Length = 455
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -2
Query: 251 HPSVNLARPPVGWQRIVEHPAHTTTLCAW 165
HPSV L GW + E A + AW
Sbjct: 332 HPSVGLFISHCGWNSVTEAAASGVPVVAW 360
>08_01_0392 -
3454224-3454325,3454926-3455035,3455496-3455609,
3455930-3456043,3456474-3456531
Length = 165
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +1
Query: 124 VKCPGCYKITTVFSHAQRV--VVCAGCSTILCQPTGGRARLTEGCH 255
V C C +T V + + +VC GC T+L G + CH
Sbjct: 43 VCCAVCSTVTAVPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCH 88
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 169 AQRVVVCAGCSTILCQPTG 225
AQ +VC+GC +L P G
Sbjct: 21 AQSQLVCSGCRNLLMYPAG 39
>07_03_0203 +
15138864-15140452,15140629-15140726,15141924-15142235,
15142437-15142749,15144025-15146023,15147033-15147068
Length = 1448
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +1
Query: 16 VTMPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCY 144
+ + + ++ P+P +E+ ++K L Y D+ C G Y
Sbjct: 623 ILLEVLAEMDEPAPLAEKWMSQVKELTYDVEDYIDDLSCQGHY 665
>06_02_0005 + 10502478-10503446
Length = 322
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -2
Query: 251 HPSVNLARPPVGWQRIVEHPAHTTTLCAW 165
HP+V L GW + E A L AW
Sbjct: 207 HPAVGLFLSHSGWNSVTEAAAAGVPLLAW 235
>03_01_0319 -
2499470-2499598,2499681-2499746,2499830-2499937,
2500125-2500259,2500763-2500840,2500994-2501044,
2501805-2501879,2501975-2502037,2503048-2503137,
2503215-2503406,2503498-2503591,2503776-2504279,
2504415-2504614,2504712-2504756,2505023-2505082,
2505476-2505520,2505858-2505941,2506121-2506318,
2506960-2507667
Length = 974
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -1
Query: 201 GTSCAYNNPLCVAKYRSYFVATGTFDIHE---IRVWMW 97
GTS + ++PL K+++ V TG+F R W W
Sbjct: 157 GTSTSSSSPLSQIKHQARHVRTGSFQRFRQQMQRAWKW 194
>04_04_0029 + 22258957-22259207,22260067-22260286
Length = 156
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +1
Query: 130 CPGCYKITTVFSHAQRVVVCAGCSTIL 210
CPG H+ V+V GCS ++
Sbjct: 96 CPGAVPFPKTQGHSLHVIVQLGCSLVM 122
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 25.0 bits (52), Expect = 9.0
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 47 TLPPRRRGGNIS*RDWYHIQTLISWMS-NVPVATK*LRYLATHRGLLYAQDVP 202
T+ R GN + D + + +S N+PV L YL TH+GL D P
Sbjct: 28 TVVARSCVGNFTAPDHLDLSLTVQQLSGNLPVLR--LEYLLTHQGLQPMLDAP 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,045,013
Number of Sequences: 37544
Number of extensions: 180546
Number of successful extensions: 556
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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