Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D22
         (282 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   2.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   2.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   2.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   5.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   5.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   5.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   6.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   6.7  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 227 PPVGWQRIVEHPAHTTT 177
           P VGW+    HPA+  T
Sbjct: 200 PLVGWKDKRSHPAYNMT 216



 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +1

Query: 70  RKHKLKRLVPHPNSYFMDVKC 132
           ++ K+K  V +P++  ++ KC
Sbjct: 335 KREKIKISVSYPSTETLNTKC 355


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 176 LCAWLNTVVIL*QPGHLTSMK*EFGCGTN 90
           L  +LNT ++L  P  +T +   FG G +
Sbjct: 562 LVCYLNTFLLLATPTTVTCILQRFGVGVS 590


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 176 LCAWLNTVVIL*QPGHLTSMK*EFGCGTN 90
           L  +LNT ++L  P  +T +   FG G +
Sbjct: 652 LVCYLNTFLLLATPTTVTCILQRFGVGVS 680


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 134 GHLTSMK*E-FGCGTNLFNLCFLLSDAGEG 48
           G L+S+  +   C TN   + ++  + GEG
Sbjct: 183 GRLSSLAVQSLDCNTNSDTMVYIADEKGEG 212


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 134 GHLTSMK*E-FGCGTNLFNLCFLLSDAGEG 48
           G L+S+  +   C TN   + ++  + GEG
Sbjct: 183 GRLSSLAVQSLDCNTNSDTMVYIADEKGEG 212


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 134 GHLTSMK*E-FGCGTNLFNLCFLLSDAGEG 48
           G L+S+  +   C TN   + ++  + GEG
Sbjct: 183 GRLSSLAVQSLDCNTNSDTMVYIADEKGEG 212


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = +2

Query: 92  WYHIQTLISWMS 127
           W H   +I W+S
Sbjct: 401 WRHFAAIIEWLS 412



 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 89  DWYHIQTLISWMS 127
           DW  +  L SWM+
Sbjct: 84  DWTSVMELHSWMT 96


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 191 QDVPQSFASPLVAELD 238
           +DV  +F  PLV E++
Sbjct: 498 EDVSPTFEKPLVREIE 513


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,871
Number of Sequences: 438
Number of extensions: 1913
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)