Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D21
(344 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 32 0.022
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 27 0.62
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.1
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 27 1.1
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun... 26 1.4
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 3.3
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 3.3
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 4.4
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 24 5.8
SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha... 24 5.8
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 24 5.8
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc... 24 5.8
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 24 7.6
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 24 7.6
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 24 7.6
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 24 7.6
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 32.3 bits (70), Expect = 0.022
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Frame = +3
Query: 12 GARLKRKLQRRITRQALAEAKAIKEQINILVYVAEMVATDP---VLAWTKAKELYSS--L 176
G+RL + E K +Q+ + +AE + P LAWT S+ L
Sbjct: 241 GSRLSTTFTSLAGQLQTPEGKTQLDQVRQISKIAEQIGATPSQLALAWTLKNPYVSTTIL 300
Query: 177 SQPEPENQARPVTLEELVVLLSRETARKFVHLVNYTHTDL 296
+PE V E + L+ E +K ++N+T ++
Sbjct: 301 GASKPEQIVENVKAVEFIDKLTPEILKKIDEILNFTPLEI 340
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 27.5 bits (58), Expect = 0.62
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 207 GGLGSRVQVGLETSIAPWLLSKLALGPLPPFL 112
GGL R ++T A W+LS L L PF+
Sbjct: 249 GGLNGRTNKDVDTCYAYWVLSSLKLLDALPFI 280
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 1.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 225 LVVLLSRETARKFVHLVNYTHTDL 296
++ ++++T KFV + N+ HTDL
Sbjct: 910 MIEYVAKKTGHKFVRINNHEHTDL 933
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 1.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 150 KAKELYSSLSQPEPENQARPVTLEELVVLLSRETARKFVHLV 275
K K+L SS + P+N + V L L +LLS +T V L+
Sbjct: 284 KLKQLLSSKLEVIPKNYIQKVVLNILFLLLSIDTHSDVVELL 325
>SPCC11E10.07c |||translation initiation factor eIF2B alpha
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 1.4
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +3
Query: 159 ELYSSLSQPEPENQARPVTLEELVVLLSRETAR---KFVHLVNYTHTDLPRNVRQGLTL 326
++Y Q +PE +E LV LLSR A+ +F+ ++ L V+ ++L
Sbjct: 21 QVYKKFLQDDPEITMPVAAIEALVQLLSRSQAKTISEFMDILQNGSNTLKEGVQNNISL 79
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 3.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 259 NSCISSTTPTRTCLETYAKA*RLLPSTC 342
NSC S+T+ TR C + Y+ R+ + C
Sbjct: 1241 NSCNSTTSNTRICEKCYSLVPRMSCTFC 1268
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 25.0 bits (52), Expect = 3.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 160 SYTRL*ANLNPRTKPAPSRSRSWSCC 237
+YT + N P+T+ P RS W CC
Sbjct: 293 TYTPMQRN-PPKTELEPIRSMRWCCC 317
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 4.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 153 AKELYSSLSQPEPENQARPVTLEELVVLL-SRETARKFVHLVN 278
AKEL + Q N T+EEL++ L ++E VH+ N
Sbjct: 170 AKELLKCIRQMCKLNVQAGFTIEELIIYLKAKELHLPLVHIFN 212
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 24.2 bits (50), Expect = 5.8
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 95 YTRLCCRNGGNGP 133
Y RLC R GNGP
Sbjct: 452 YKRLCFRTKGNGP 464
>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
Tim9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 84
Score = 24.2 bits (50), Expect = 5.8
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 18 RLKRKLQRRITRQALAEAKAIKEQINILVYVAEMVATDPVLAWTKAK 158
RL K Q +T+ + EAK +KE +N+ + + +D V +T +K
Sbjct: 3 RLNVKEQEHLTQ--VLEAKQLKEYLNMYSTLTQNCFSDCVQDFTSSK 47
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 24.2 bits (50), Expect = 5.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 196 FSGSGWLRDEYSSLAFVQAS 137
FSG WLRD SL+ V S
Sbjct: 42 FSGQAWLRDTIPSLSNVVES 61
>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
Nse5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 24.2 bits (50), Expect = 5.8
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 129 DPVLAWTKAKELYSSLSQPEPENQARPVT-LEELVVLL 239
D L +T K+LY+ Q E RP+ L++++VLL
Sbjct: 339 DKELFYTTLKQLYTMYQQTELVGIDRPMAILKDMLVLL 376
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 23.8 bits (49), Expect = 7.6
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -1
Query: 329 NKRQALAYVSRQVRVGVVDEMHEFPR 252
N++ + +V+RQVR+ + +++PR
Sbjct: 170 NEKSLVRHVARQVRLALKKNNNQYPR 195
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 23.8 bits (49), Expect = 7.6
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 27 RKLQRRITRQALAEAKAIKEQINILVYVAEMVATDPVLAWTKAKELYSSLSQPEPENQAR 206
R+ Q IT+QA AKA+K + + + + + AK + PE +N
Sbjct: 132 REDQEEITKQARRYAKAMKASL-VFCSTSHSINVQKIFKIVLAKVFDLKCTIPEIKNVGD 190
Query: 207 PV 212
P+
Sbjct: 191 PI 192
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 23.8 bits (49), Expect = 7.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 201 ARPVTLEELVVLLSRETARKFVHLVNYTHTDL 296
AR TLEEL+ + S+E + + +H DL
Sbjct: 112 AREATLEELLQVHSQEMYDRVTNTEKMSHEDL 143
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 23.8 bits (49), Expect = 7.6
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 231 VLLSRETARKFVHLVNYTHTDL-PRNV 308
+L+ +F+H NY H DL P NV
Sbjct: 673 ILVEVALGLQFIHHKNYVHLDLKPANV 699
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,279,632
Number of Sequences: 5004
Number of extensions: 23002
Number of successful extensions: 77
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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