Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D21
(344 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530 31 0.24
11_05_0091 - 18982390-18982948,18983088-18983173 30 0.42
04_01_0344 + 4517730-4517918,4518212-4518359,4518454-4518569,451... 28 2.3
07_03_0922 - 22612773-22613321,22613616-22614189,22614389-226144... 27 3.0
12_01_0287 - 2152179-2152424,2153300-2153339,2153612-2153831,215... 27 3.9
11_01_0283 - 2095291-2095566,2095962-2096348,2096523-2096881,209... 27 3.9
03_05_0855 + 28267231-28267603,28267725-28267966,28268071-282681... 27 3.9
02_05_1272 + 35373843-35374031,35374343-35374490,35374586-353747... 27 3.9
12_01_0125 - 946480-947242,947283-947374,947462-947680,948059-94... 27 5.2
07_03_0532 + 19171290-19171394,19173122-19173302,19173761-191742... 27 5.2
01_05_0170 - 18888849-18889880 27 5.2
11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767 26 6.9
09_06_0278 + 21991016-21992120,21992341-21992702,21992766-219934... 26 6.9
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677... 26 6.9
06_03_0522 - 21726317-21726634,21727202-21727654,21727771-217280... 26 9.1
04_04_1211 + 31783076-31783680,31784162-31784427,31784546-31785378 26 9.1
04_03_0976 + 21376873-21377289,21377399-21377581,21378463-213785... 26 9.1
02_05_0497 - 29502012-29502101,29502128-29502197,29502302-295024... 26 9.1
>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
Length = 519
Score = 31.1 bits (67), Expect = 0.24
Identities = 23/64 (35%), Positives = 32/64 (50%)
Frame = +3
Query: 39 RRITRQALAEAKAIKEQINILVYVAEMVATDPVLAWTKAKELYSSLSQPEPENQARPVTL 218
RRI R E K +KEQIN+L ++ T+ ++ K L LSQ E E + V L
Sbjct: 382 RRIDRPETNEEKDLKEQINLL--RVDLKETEANISDEDKKGLSEKLSQMERELERLTVEL 439
Query: 219 EELV 230
+ V
Sbjct: 440 DNKV 443
>11_05_0091 - 18982390-18982948,18983088-18983173
Length = 214
Score = 30.3 bits (65), Expect = 0.42
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 181 NLNPRTKPAPSRSRSWSCC*AGKPRGNSCISSTTP 285
+L P P+P+ + CC G+ NS ++S TP
Sbjct: 130 SLQPSPSPSPTPDSATPCCLTGRLADNSTLNSDTP 164
>04_01_0344 +
4517730-4517918,4518212-4518359,4518454-4518569,
4518917-4518979,4519084-4519152,4519317-4519352
Length = 206
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 142 LGQKPRSYTRL*ANLNPRTKPAPSRSRSWSCC*AGKPRGNSCISSTTPTRTCL 300
+G K Y+ + + TKP +R WS C RGN S+ TR L
Sbjct: 105 MGDKDMDYSSI--EYHKPTKPRVRHTRPWSSCIKSSNRGNFHPSTKLRTRVNL 155
>07_03_0922 -
22612773-22613321,22613616-22614189,22614389-22614466,
22615455-22615504,22616215-22616448
Length = 494
Score = 27.5 bits (58), Expect = 3.0
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +2
Query: 152 SQGAILVSKPT*TREPSPPRHARGVGRVAEQGNREEIRASRQLHPHGLA*KRTPR 316
S+G V+ T + +PP RGVGR + G + RA+ Q KRT R
Sbjct: 443 SRGGSSVTANVKTMQRNPPAKKRGVGRPPKNGQK---RAAAQQDSPNKGRKRTRR 494
>12_01_0287 -
2152179-2152424,2153300-2153339,2153612-2153831,
2153917-2153995,2154087-2154155,2154237-2154329,
2154411-2154477,2154579-2154640,2154729-2154774,
2155359-2155404,2155490-2155547,2155717-2155755,
2155849-2155920,2156067-2156158,2157036-2157135
Length = 442
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 3 SARGARLKRKLQRRITRQALAEAKAIKEQINILVYVAEMVATDP 134
S RG +R Q+++ Q L+ I E+ N+ VY+ V DP
Sbjct: 239 SGRGELAER--QQKLA-QMLSRLTKIAEEFNVAVYITNQVIADP 279
>11_01_0283 -
2095291-2095566,2095962-2096348,2096523-2096881,
2097275-2097398,2097480-2097548,2098536-2098584,
2099185-2099299,2099823-2099872,2099969-2100106,
2101136-2101197,2102066-2102180,2103433-2103664,
2103748-2103826,2103925-2103993,2104079-2104171,
2104577-2104622,2105223-2105268,2105354-2105411,
2105577-2105615,2105712-2105783,2105930-2106021,
2106824-2106923
Length = 889
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 3 SARGARLKRKLQRRITRQALAEAKAIKEQINILVYVAEMVATDP 134
S RG +R Q+++ Q L+ I E+ N+ VY+ V DP
Sbjct: 196 SGRGELAER--QQKLA-QMLSRLTKIAEEFNVAVYITNQVIADP 236
>03_05_0855 +
28267231-28267603,28267725-28267966,28268071-28268193,
28268507-28268623,28268739-28268921,28269017-28269158,
28269379-28269544,28270194-28270212
Length = 454
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 194 EPSPPRHARGVGRVAEQGNREEIRASRQ 277
+P P G GRV E+G E +R Q
Sbjct: 63 DPGPSDGGEGNGRVVEEGEEEVVRRKEQ 90
>02_05_1272 +
35373843-35374031,35374343-35374490,35374586-35374704,
35374992-35375121,35375122-35375201
Length = 221
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +1
Query: 142 LGQKPRSYTRL*ANLNPRTKPAPSRSRSWSCC*AGKPRGNSCISSTTPT 288
+G K Y + P TKP +R WS C RGN SS T
Sbjct: 105 MGDKDMDYLAIIEYHKP-TKPRVRHTRPWSSCTKSSNRGNFHPSSILQT 152
>12_01_0125 -
946480-947242,947283-947374,947462-947680,948059-949156
Length = 723
Score = 26.6 bits (56), Expect = 5.2
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 161 AILVSKPT*TREPSPPRHARGVGRVAEQGNREEIR-ASRQLHPHGLA*KR 307
AI+V P+ R+PSP RG G A G R + +SR+L G + K+
Sbjct: 264 AIIV--PSRYRQPSPVGGRRGAGSPAPGGRRASLSPSSRRLSGEGSSKKK 311
>07_03_0532 +
19171290-19171394,19173122-19173302,19173761-19174245,
19174877-19176283,19176413-19176628
Length = 797
Score = 26.6 bits (56), Expect = 5.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 99 LVYVAEMVATDPVLAWTKAKELYSSLSQPEPENQARPVTLEELVVLL 239
LV VA + VL W KA++ +SL A+ TLE+ +V L
Sbjct: 82 LVKQHSKVAEEAVLGWEKAEKEIASLKTQLNAATAKNSTLEDRIVHL 128
>01_05_0170 - 18888849-18889880
Length = 343
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -2
Query: 199 WFSGSGWLRDEYS-SLAFVQAST 134
W S WL DEYS +L F ST
Sbjct: 49 WIMASRWLEDEYSENLVFYSLST 71
>11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767
Length = 355
Score = 26.2 bits (55), Expect = 6.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 184 LNPRTKPAPSRSRSW 228
LNPR PAP +R+W
Sbjct: 77 LNPRATPAPPSARTW 91
>09_06_0278 +
21991016-21992120,21992341-21992702,21992766-21993459,
21994064-21994191
Length = 762
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 217 SRSWSCC*AGKPRGNSCISSTTPTRTCLETY 309
+ +WSC A R ++CISS + R + Y
Sbjct: 268 ANNWSCPTAASGRKSACISSNSFCRNIADNY 298
>02_02_0099 +
6768115-6768285,6769950-6770034,6770501-6770628,
6771429-6771465,6773108-6774193,6774337-6774447,
6774701-6774817,6774818-6775120,6776092-6776513,
6776645-6777274
Length = 1029
Score = 26.2 bits (55), Expect = 6.9
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -1
Query: 341 HVLGNKRQALAYVSRQVRVGVVDEMHEFPRGFPAQQH 231
HVLG Q A +R+ V+DE E RGF Q H
Sbjct: 787 HVLG-MLQGRALCPDHIRMFVLDEADEVLRGFKDQIH 822
>06_03_0522 -
21726317-21726634,21727202-21727654,21727771-21728025,
21728109-21728249,21728404-21728565,21728660-21728820,
21731598-21731733
Length = 541
Score = 25.8 bits (54), Expect = 9.1
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 60 LAEAKAIKEQINILVYVAEMVATDPVLAWTKAKELYSSLSQPEPENQARP-VTLEELVV 233
LAE EQ+ +LV+ A + A D L T+ +Y P+ QAR VTL +L+V
Sbjct: 295 LAENTLTDEQLMMLVWEALIEAADTTLVTTE-WAMYELAK--NPDKQARNIVTLFQLIV 350
>04_04_1211 + 31783076-31783680,31784162-31784427,31784546-31785378
Length = 567
Score = 25.8 bits (54), Expect = 9.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 129 DPVLAWTKAKELYSSLSQPEPENQARPVTLEELV-VLLSRETARK 260
D L W AK + S P P A P TL++ V V ++R A +
Sbjct: 414 DVGLPWLNAKPSTGAASTPAPAAGAFPATLDKTVRVAVTRPRASR 458
>04_03_0976 +
21376873-21377289,21377399-21377581,21378463-21378591,
21378869-21378999,21379111-21379270,21379783-21380067
Length = 434
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 167 LVSKPT*TREPSPPRHARGVG 229
L + PT PSPP+H VG
Sbjct: 125 LAASPTPAPSPSPPQHGMAVG 145
>02_05_0497 -
29502012-29502101,29502128-29502197,29502302-29502411,
29502530-29502641,29503341-29503498,29503592-29503807,
29504127-29504354,29504722-29504801,29504886-29505056,
29505179-29505281,29505369-29505551,29506313-29506813,
29506935-29507100,29507517-29507566,29508047-29508127,
29508291-29508398,29508874-29508939,29509053-29509109,
29509442-29509507,29509917-29510006,29510850-29510975,
29511681-29511717,29512192-29512250,29512562-29512615,
29513294-29513428,29513542-29513612,29513720-29513957
Length = 1141
Score = 25.8 bits (54), Expect = 9.1
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 320 QAL-AYVSRQVRVGVVD-EMHEFPRGFPAQQHDQLLERDGAGLVLGFRL 180
QAL A S Q++ G E H+F RG P Q+LE+ +G FR+
Sbjct: 805 QALWASFSTQLKYGCSSSEDHQFVRGIPIYAISQVLEKVISGTPGPFRI 853
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,455,227
Number of Sequences: 37544
Number of extensions: 194044
Number of successful extensions: 644
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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