Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D21
         (344 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    27   4.8  
U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence ...    26   6.3  
Z46794-2|CAA86774.1|  950|Caenorhabditis elegans Hypothetical pr...    26   8.3  
U58757-1|AAD47117.2|  620|Caenorhabditis elegans Dicer related h...    26   8.3  
AL161712-20|CAC70138.1|  379|Caenorhabditis elegans Hypothetical...    26   8.3  

>U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical
           protein C14F5.4 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 126 TDPVLAWTKAKELY--SSLSQPEPENQARPVTLEEL 227
           TDP++A++   EL   S L Q   E +  P TLEEL
Sbjct: 26  TDPLIAFSSTTELITASELMQKCREKKPVPATLEEL 61


>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical protein
            C09G1.2 protein.
          Length = 1115

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 180  QPEPENQARPVTLEELVVLLSRETARKFVHLVNYTHTDLPRNVRQG 317
            +P  E Q   + L+     + R++    VH+ NY  T +  N R G
Sbjct: 944  RPFFEGQNNSIELKGTATQIERQSVSSEVHISNYQSTPMKNNGRGG 989


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +2

Query: 113 RNGGNGPSASLDKSQGAILVSKPT*TREPSPPRHARGVGRVAEQGNREEIRASRQL 280
           R GG GP    +  +G +L       RE    R   G GR   + +R+  R   Q+
Sbjct: 804 RRGGGGPPFRPENGRGRLLDQSEMWNREQREMRGGGGAGRDGGREHRDYDRDRSQI 859


>U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence of
           males (increasedx chromosome loss) protein 10 protein.
          Length = 490

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 120 VATDPVLAWTKAKELYSSLSQPEPENQARPVTLEELV--VLLSRETARKFVHLVNYTHTD 293
           V  + +  WT+ +E+   L   E EN  +   +EE +  ++   ETA+K +   + TH  
Sbjct: 293 VIIEKIHQWTEVREVIIDLIDVESENLRKLKEMEEQLDFMMKEMETAQKRLVEQSETHEQ 352

Query: 294 L 296
           L
Sbjct: 353 L 353


>Z46794-2|CAA86774.1|  950|Caenorhabditis elegans Hypothetical
           protein R06F6.2 protein.
          Length = 950

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 209 RHARGVGRVAEQGNREEIRASRQLHP 286
           R    + R+ +  ++EEI AS Q+HP
Sbjct: 679 RDLEAIIRLCQSCSKEEIEASEQIHP 704


>U58757-1|AAD47117.2|  620|Caenorhabditis elegans Dicer related
           helicase protein 2 protein.
          Length = 620

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 30  KLQRRITRQALAEAKAIKEQIN-ILVYVAEMVATDPVLAWTK 152
           K+  RI R+   +A+ IKEQIN  +VY    +  D VL   K
Sbjct: 443 KVWPRIQREDTDKAQRIKEQINRNIVYKIVCMKCDTVLCTNK 484


>AL161712-20|CAC70138.1|  379|Caenorhabditis elegans Hypothetical
           protein Y66D12A.20 protein.
          Length = 379

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +3

Query: 135 VLAWTKAKELYSSLSQPEPENQARPVTLEELVVLLSRETARKFVHLVNYTHTDLPR 302
           V+A T   E Y+   + + E  +RPV   +++VL++ +  R F + V    TD+ R
Sbjct: 42  VVADTVTNEKYAMKCERQ-EGNSRPVLKLDVMVLMATKGLRGFPNFVAAGRTDVYR 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,269,318
Number of Sequences: 27780
Number of extensions: 138896
Number of successful extensions: 398
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)