Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D19
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0022 + 324422-324445,324870-325265,325366-325546,325781-32...    27   4.3  
05_07_0320 + 29235266-29235305,29235409-29236682                       26   7.6  

>04_01_0022 +
           324422-324445,324870-325265,325366-325546,325781-326072,
           326389-326461,326610-326700,326815-326894,326992-327234
          Length = 459

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 109 LHKQLRVTSLNVAQLYKAHYVTKYIILVFLCTHIYVRYVIELVFIVRVIVS 261
           L   L  TS+ VA+ Y   Y T   + V   TH++ RY + L  ++ +I++
Sbjct: 343 LFSSLTTTSM-VARRYVWIYATIQFLFVVFFTHLFYRY-LHLQAVISIILA 391


>05_07_0320 + 29235266-29235305,29235409-29236682
          Length = 437

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 5   RVCLPSWTTSSFNSRQDCGQ 64
           R C+PSW   + N+   CGQ
Sbjct: 74  RFCIPSWVAFTANATTLCGQ 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,753,251
Number of Sequences: 37544
Number of extensions: 144299
Number of successful extensions: 251
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)