Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D19
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     29   0.95 
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    29   0.95 

>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 270 RLVRDNYSHYKHQLNYVSYVYVCT*ENKN 184
           R++R+N+ +Y+   +Y+  VY CT E+ N
Sbjct: 333 RVLRNNFKNYQLLTSYIEQVYNCTNEDCN 361


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
           protein F35H10.10 protein.
          Length = 1404

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 270 RLVRDNYSHYKHQLNYVSYVYVCT*ENKN 184
           R++R+N+ +Y+   +Y+  VY CT E+ N
Sbjct: 333 RVLRNNFKNYQLLTSYIEQVYNCTNEDCN 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,931,333
Number of Sequences: 27780
Number of extensions: 144423
Number of successful extensions: 313
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)