Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D18
(216 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni... 25 1.0
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 24 3.1
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 24 3.1
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 24 3.1
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 23 4.1
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 23 5.5
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 23 5.5
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 23 7.2
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 23 7.2
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 22 9.6
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 22 9.6
>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 185 PIALGDSGLTNAIGKVRASMHFPPSKKKGMEK 90
P ALG + ++ G+ S++ PP K EK
Sbjct: 54 PFALGPNASSSGTGRPIGSVYVPPPNVKNEEK 85
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 23.8 bits (49), Expect = 3.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 124 ISPRQKKKGWRNDLMRRVPILLLRLLSSSHTINY*TNFFL 5
I P ++K WRN V ++LL L + NFF+
Sbjct: 1203 IGPPYREKVWRNYSFTAVVVVLLILTVKLIRLQNHKNFFM 1242
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 123 FPPVKKKRDGEMI*CDAYPYCY 58
FPP KK+D D PY Y
Sbjct: 273 FPPYDKKKDTTRSAADYIPYTY 294
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 120 EMH*RSYLTYCISETGVSQCNR*RGISPSLIV 215
EM Y+ CI + V +CN +G+ +IV
Sbjct: 151 EMAETEYVRACIMQKQVPKCNSCKGLIKPMIV 182
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 64 VWVRVASNHFSIPF 105
VW R S H+SIPF
Sbjct: 1024 VWARNLSMHWSIPF 1037
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 124 ISPRQKKKGWRNDLMRRVPILLLRLLSSS 38
+S QK KG+R + V ++L+ LLS +
Sbjct: 296 VSSVQKMKGFRTSVNSFVGLVLITLLSGA 324
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 23.0 bits (47), Expect = 5.5
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = -2
Query: 197 NAPLPIALG-DSGLT-NA-IGKVRASMHFPPSKKKGMEK*FDATRTHTVTASFKLFPYNK 27
NA +P +L SG++ NA + + PPS ++ ++K +A + +F+ F YNK
Sbjct: 124 NATIPSSLLLSSGISPNATVSNAQYGPAQPPSVEEQVQKILNAWNLNHPDCAFQRFFYNK 183
Query: 26 L 24
+
Sbjct: 184 V 184
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 22.6 bits (46), Expect = 7.2
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -3
Query: 130 QCISPRQKKKGWRND 86
+CI P ++K+ W+ D
Sbjct: 663 RCIKPNEEKEAWKFD 677
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 52 DAVTVWVRVASNHFSIPFFFD 114
D V++ V A N +SIPFF+D
Sbjct: 30 DTVSL-VSNAPNIYSIPFFYD 49
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 94 SIPFFFDGGKCIDALTLPIALVRPES 171
+IP F DG +D L L + ++PE+
Sbjct: 716 NIPVFVDGLYRVDYLDLFLTSLKPEN 741
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 188 LPIALGDSGLTNAIGKVRASMHF 120
+P+ +GD L +A+ S HF
Sbjct: 305 IPMDMGDEELNDALNNTHLSDHF 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 980,880
Number of Sequences: 5004
Number of extensions: 16897
Number of successful extensions: 36
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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