Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D18
         (216 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0137 - 1082786-1082846,1083850-1084142,1084250-1084550,108...    28   1.2  
05_01_0437 + 3471154-3471447,3471664-3471858,3472619-3472741,347...    26   3.6  
02_03_0401 - 18604244-18604303,18605059-18605346,18605459-186055...    26   4.8  

>03_01_0137 -
           1082786-1082846,1083850-1084142,1084250-1084550,
           1084792-1084862,1085008-1085115,1085205-1085279,
           1085298-1085440,1087848-1088097
          Length = 433

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +1

Query: 10  KN*FNNLLYG--KSLKDAVTVWVRVASNHFSIPFFFDGGKCIDALTLPIALVRPESPNAI 183
           +N +N   +G  K+L  + T W+   +N   + +   GG CI      + L+    P  +
Sbjct: 357 QNNYNTYSFGGSKALVLSTTSWIGGKNNFIGVAYLTIGGLCIFLAVGFVVLLYMVKPRTL 416

Query: 184 GKGAFL 201
           G  ++L
Sbjct: 417 GDPSYL 422


>05_01_0437 +
           3471154-3471447,3471664-3471858,3472619-3472741,
           3473245-3473430,3473633-3473766,3473866-3474052,
           3474179-3474280
          Length = 406

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 31  LYGKSLKDAVTVWVRVASNHFSIPFFFDGG-KCIDALTLP 147
           LYG +L+  + ++++        PF FDG     D L+LP
Sbjct: 288 LYGMTLEPLLNIYMQAGLTALKTPFCFDGNCPKEDPLSLP 327


>02_03_0401 -
           18604244-18604303,18605059-18605346,18605459-18605562,
           18605640-18605686,18605790-18605860,18606482-18606601,
           18606686-18606856,18607304-18607393,18608949-18609041,
           18609141-18609461
          Length = 454

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 115 GGKCIDALTLPIALVRPESPNAIGKGAF 198
           GG+ ID L+   ALV  +    IG+G+F
Sbjct: 72  GGRGIDGLSAAAALVDRKGKRKIGEGSF 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,428,343
Number of Sequences: 37544
Number of extensions: 116443
Number of successful extensions: 205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)