Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D18
         (216 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical ...    25   7.3  
AF016449-2|AAG24006.1|  333|Caenorhabditis elegans Seven tm rece...    25   7.3  
AC024859-5|AAK29972.3|  360|Caenorhabditis elegans Hypothetical ...    25   7.3  

>Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical
           protein W07G1.6 protein.
          Length = 360

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +3

Query: 27  FIVWEELKRRSNSMGTRRIKSFLHPFFF*RGEMH*RSYLTYCISETGVSQC 179
           F++W  L      M    I+  +  FFF   E   RSYL Y +  T  SQC
Sbjct: 129 FLIWHYLASTVAGMCNFVIERAIASFFFSDYEKKQRSYLGYTLLAT--SQC 177


>AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical
           protein K06A5.4 protein.
          Length = 877

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 142 R*ERQCISPRQKKKGWR-NDLMRRVPILLLRLLSSS 38
           R  R C++P  KK  WR  DL R   ++ L+  S+S
Sbjct: 608 RPRRSCVTPVAKKITWRKQDLDRLKRVIALKKPSAS 643


>AF016449-2|AAG24006.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 244 protein.
          Length = 333

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 25  NLLYGKSLKDAVTVWVRVASNHFSIPFFFDGGKCIDAL 138
           N L G++L  A  + +  AS  FSIPFF  G + + AL
Sbjct: 249 NSLVGQALVPAFLM-LAPASIVFSIPFFHAGNELMGAL 285


>AC024859-5|AAK29972.3|  360|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.7 protein.
          Length = 360

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -3

Query: 136 ERQCISPRQKKKGWRN---DLMRRVPILLLRLLSSS 38
           ERQ +S ++KK+ W N   ++ R++P+ +L  +  S
Sbjct: 136 ERQEMSIQRKKREWENLESNMERQIPLRILTAIQIS 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,367,775
Number of Sequences: 27780
Number of extensions: 94715
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)