Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D17
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 197 6e-52
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 196 1e-51
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 1.9
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 25 4.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 7.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 7.5
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 24 9.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 24 9.9
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 197 bits (481), Expect = 6e-52
Identities = 89/129 (68%), Positives = 106/129 (82%)
Frame = +1
Query: 79 LSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAG 258
++ ARP VS+Y+ K V+ +L LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 259 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQ 438
HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN +
Sbjct: 60 HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119
Query: 439 RRAAVADAV 465
+R A+A AV
Sbjct: 120 KRYAIASAV 128
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 196 bits (479), Expect = 1e-51
Identities = 88/129 (68%), Positives = 106/129 (82%)
Frame = +1
Query: 79 LSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAG 258
++ ARP VS+YS K V+ ++ LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 259 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQ 438
HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH +VN +
Sbjct: 60 HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119
Query: 439 RRAAVADAV 465
+R A++ AV
Sbjct: 120 KRYAISSAV 128
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 197 SLTRSGLMGALNTNGRGSEAPATTSLF 117
S T SGL GA NTN + + T LF
Sbjct: 593 STTTSGLFGASNTNNQAQTSNFGTGLF 619
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 25.4 bits (53), Expect = 4.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 439 SAVGSRDGASASTAWSARTYVRRGTCYRMHPAQIC 335
S V S ++ + S T+V T Y++ P QIC
Sbjct: 132 STVSSTPVSTIYSGTSGTTFVSSSTTYQVIPTQIC 166
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.6 bits (51), Expect = 7.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 377 PPRHMLPNAPCPDLWVPPP 321
PP+ P P P + VPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP 1717
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 7.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 377 PPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 270
PP P P P + VPP +TA PVP SA
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSA 1224
Score = 24.6 bits (51), Expect = 7.5
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = -2
Query: 395 VGANIRPPRHMLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 270
VG PP P P P +PP +A P P A
Sbjct: 1205 VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEA 1246
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 24.2 bits (50), Expect = 9.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 143 EAPATTSLFSEYTDTKGRATDRLISLYQRSYSSKKH 36
++ A S F EY + +++ L SL +SYSS +
Sbjct: 650 DSNADESQFLEYANDSPNSSESLESLNNQSYSSSPY 685
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.2 bits (50), Expect = 9.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 200 TSLTRSGLMGALNTNGRGSEAPATTSLFSEYTDTKGRATDRLIS 69
+SLT S + + +TN S +P ++SL S + A+ S
Sbjct: 83 SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTS 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,335
Number of Sequences: 5004
Number of extensions: 32725
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -