Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D16
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0538 - 4038954-4039444,4040172-4040248,4040838-4040911,404... 31 0.31
04_04_1108 + 30961600-30962013,30963131-30964465 29 1.2
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 28 1.6
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 27 3.8
03_02_0105 - 5648436-5648536,5648650-5648692,5649152-5649244,564... 26 6.6
02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236 26 6.6
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 26 6.6
10_05_0038 - 8458901-8459207,8459367-8459705,8459710-8459913,846... 26 8.7
08_02_0521 - 18135036-18135152,18135662-18135943 26 8.7
02_05_0029 - 25194827-25195095,25195129-25197970 26 8.7
>03_01_0538 -
4038954-4039444,4040172-4040248,4040838-4040911,
4041115-4041203,4041481-4041563,4041645-4042233,
4042915-4043101
Length = 529
Score = 30.7 bits (66), Expect = 0.31
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 111 PLPGCTSLLPKRRPKPVSSTFFNIFIHNSYFICRPS 4
P GCT +LP RP P + H YF+ P+
Sbjct: 138 PPAGCTGVLPDHRPPPPQQDHIFLPPHGQYFLGPPN 173
>04_04_1108 + 30961600-30962013,30963131-30964465
Length = 582
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 126 PRYRIPLPGCTSLLPKRRPKPVSST 52
PR +PLPG S++P P P ++T
Sbjct: 48 PRRALPLPGRASVVPSAVPAPATAT 72
>11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 119 YRGKFSRC--SVRVY*KRYIVMSQGKGP*IYRKVSRIERYEY 238
+RG RC S++V Y+V S+ +G I+RK+ R++ Y
Sbjct: 927 FRGDLKRCCESMQVALASYLVPSEARGLDIWRKLQRLKNACY 968
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 178 HNDVSFSIHSDTAPTKFSAIPYSFTGLH 95
+NDV+ S+ S FS PY F+ LH
Sbjct: 1222 YNDVTKSMESSRWSLDFSTWPYRFSNLH 1249
>03_02_0105 -
5648436-5648536,5648650-5648692,5649152-5649244,
5649424-5649553,5649631-5649747,5650667-5650715,
5651139-5651229,5651381-5651473,5651565-5651611,
5651719-5651779,5651973-5652051,5652184-5652284,
5652409-5652476,5652593-5652650
Length = 376
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 246 GMSLINTGSARSARSYEPLAEEPKTREL 329
G L+N SA SA + L +P+T EL
Sbjct: 132 GTLLVNKVSAESANQFGELVADPETNEL 159
>02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236
Length = 1096
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 217 ANLSVNLRAFSLRHNDVSFSI 155
ANLS NL+AF+L N +S I
Sbjct: 446 ANLSTNLKAFALSENMISGKI 466
>01_05_0495 +
22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 123 AENLVGAVSECIEKDTSLCLKEKALK 200
++NL+G +S+ +E T +CL+ K
Sbjct: 740 SDNLLGNISDIVEASTEICLENLTWK 765
>10_05_0038 -
8458901-8459207,8459367-8459705,8459710-8459913,
8460374-8460492
Length = 322
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 51 MWKKLALVAVLATVKCNPVKEYGIAENLVGAVSECIEKDTSLCLKEKALK 200
MW ++ ++ V E G ++L G S K+TS LK +K
Sbjct: 179 MWPRMTFPIATLEIRWRGVGEAGSGDDLRGLASMRFGKETSPRLKRTVMK 228
>08_02_0521 - 18135036-18135152,18135662-18135943
Length = 132
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 75 RPKPVSSTFFNIFIHNSY 22
+P P+S FF+ F HNS+
Sbjct: 104 KPMPLSHLFFDFFHHNSH 121
>02_05_0029 - 25194827-25195095,25195129-25197970
Length = 1036
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 318 SWVLQLKVRSCERNALNR 265
SWVL +K ++CE L+R
Sbjct: 969 SWVLHMKEKNCEAEVLDR 986
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,845,609
Number of Sequences: 37544
Number of extensions: 171170
Number of successful extensions: 428
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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