Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D15
(385 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 43 1e-04
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 41 4e-04
02_01_0615 - 4604373-4604537,4604618-4604707,4604871-4604989,460... 31 0.24
10_01_0130 + 1540412-1541173 30 0.72
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 28 2.9
07_03_1697 - 28795521-28797328,28797430-28797550 27 3.8
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 27 5.1
11_06_0584 - 25220371-25222917 27 6.7
11_06_0086 + 19914234-19914382,19914590-19914653,19914793-199148... 27 6.7
09_04_0165 + 15274448-15277336 27 6.7
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 27 6.7
02_05_1214 + 34976814-34979813 27 6.7
12_02_0438 + 19093346-19093522,19094234-19094863 26 8.9
03_06_0690 - 35571816-35572586 26 8.9
03_02_0878 + 12088119-12088233,12088511-12088608,12088689-120887... 26 8.9
03_02_0524 - 9127695-9127991 26 8.9
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124... 26 8.9
08_02_1481 - 27413397-27413414,27413738-27414367,27414471-27415484 23 9.8
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +2
Query: 167 FLVTERITLADIIFYSTLLHAFQHVLDPTVRSKLVNVQRWFLTVGHQPQVSSVVGE 334
+LV +TLADI+ L + F +L + S+ +V+R+F T+ +QP V+G+
Sbjct: 174 YLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKVIGD 229
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 40.7 bits (91), Expect = 4e-04
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +2
Query: 167 FLVTERITLADIIFYSTLLHAFQHVLDPTVRSKLVNVQRWFLTVGHQPQVSSVVGE 334
+LV +TLADI+ L F ++ + S+ +V+R+F T+ +QP V+G+
Sbjct: 159 YLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVNQPNFKKVLGD 214
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +2
Query: 167 FLVTERITLADIIFYSTLLHAFQHVLDPTVRSKLVNVQRWFLTVGHQPQVSSVVGE 334
+LV +TLADI+ L F ++ S+ +V+R+F T+ +QP V+G+
Sbjct: 720 YLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHVERYFWTMVNQPNFKKVMGD 775
>02_01_0615 -
4604373-4604537,4604618-4604707,4604871-4604989,
4605132-4605234,4605318-4605414,4605512-4605575,
4605673-4605805,4605899-4606143,4606263-4606439,
4607110-4607419
Length = 500
Score = 31.5 bits (68), Expect = 0.24
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 134 SAASKSFFARSTFCLLNCMMPKYGKTHAQDAGSSSLSAHP 15
S++S+ FF +L+C +P G+TH A ++S S P
Sbjct: 11 SSSSRFFFLLVLVLVLSCSLPANGRTHRSPAAAASPSPGP 50
>10_01_0130 + 1540412-1541173
Length = 253
Score = 29.9 bits (64), Expect = 0.72
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 158 QRCPSRSCSAASKSFFARSTFCLLNCMMPK 69
+R PS + +AASK +FA FC+ PK
Sbjct: 205 RRRPSPAAAAASKMYFAFCPFCVAKAAQPK 234
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 27.9 bits (59), Expect = 2.9
Identities = 20/53 (37%), Positives = 22/53 (41%)
Frame = -3
Query: 317 TPGADDPPLGTNAAHSLACYVQSDPTHVGKHAAACCRR*YLQE*SSP*PGSAA 159
TPGA DP G A SDP +G C R +L E PG AA
Sbjct: 1039 TPGAPDPQDGPEATVGRPLLSSSDPEDIGTE-GECAPRGHLDE---ECPGDAA 1087
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 27.5 bits (58), Expect = 3.8
Identities = 19/66 (28%), Positives = 26/66 (39%)
Frame = -3
Query: 302 DPPLGTNAAHSLACYVQSDPTHVGKHAAACCRR*YLQE*SSP*PGSAAQRCPSRSCSAAS 123
D P +A H +C+ P H GK A CR + P + P R +AA+
Sbjct: 352 DHPCCHDARHGPSCHHGCCPPHHGKQACTSCRGQHCCR-----PRTQESPAPRRPAAAAA 406
Query: 122 KSFFAR 105
K R
Sbjct: 407 KEVVKR 412
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 167 FLVTERITLADIIFYSTLLHAFQHVLDPTVRSKLVNVQRWFLTV 298
FLV+ +++ADI+ +S L Q K N+ RWF ++
Sbjct: 111 FLVSYGLSIADIVVWSNLAGTGQRWESLRRSKKYQNLVRWFNSI 154
>11_06_0584 - 25220371-25222917
Length = 848
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 113 FARSTFCLLNCMMPKYGKTHAQDAGSSSLS 24
+ +ST C C +P+ K DAG S+++
Sbjct: 408 WTQSTICCCYCRVPRIMKATTADAGGSNIN 437
>11_06_0086 +
19914234-19914382,19914590-19914653,19914793-19914882,
19915000-19915056,19915147-19915195,19915393-19915469,
19915686-19915725,19915813-19915907,19916007-19916171,
19916317-19916427,19916515-19916602,19916691-19916757,
19916822-19916939,19917022-19917139,19917398-19917643,
19917736-19917833,19917961-19918143,19918237-19918356,
19918515-19918565
Length = 661
Score = 26.6 bits (56), Expect = 6.7
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +2
Query: 164 HFL-VTERITLADIIFYS--TLLHAFQHVLDPTVRSKLVNVQRWFLTVGHQPQVSSVVGE 334
H L VT+++ D ++S L H F V+ SK ++ W + + + ++
Sbjct: 254 HLLKVTDKVVAEDDSYFSYLPLAHIFDQVIGNYCISKGASIGFWQADIRYLMEDVQMMKP 313
Query: 335 PVLCLAPPVFD 367
V C P V+D
Sbjct: 314 TVFCGVPRVYD 324
>09_04_0165 + 15274448-15277336
Length = 962
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 158 EPHFLVTERITLADIIFYSTLLHAFQHVLDPTVRSKLVNVQR 283
E FL+ + +ADII Y+T++ A H + RS + VQR
Sbjct: 772 EKVFLMARKQGMADIISYNTIIAA--HAKNGDFRSMIYFVQR 811
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 26.6 bits (56), Expect = 6.7
Identities = 20/53 (37%), Positives = 22/53 (41%)
Frame = -3
Query: 317 TPGADDPPLGTNAAHSLACYVQSDPTHVGKHAAACCRR*YLQE*SSP*PGSAA 159
TPGA DP G A SDP +G C R +L E PG AA
Sbjct: 887 TPGAPDPQDGPEATAGRPLLSSSDPEVIGTE-DECAPRAHLDE---ERPGDAA 935
>02_05_1214 + 34976814-34979813
Length = 999
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 230 FQHVLDPTVRSKLVNVQRWFLTVGHQPQ--VSSVVGEPVLCLAPPVFDPKKYQ 382
F H+ + K+ + V +P+ V +VV P + APPV PKK Q
Sbjct: 130 FSHIRGE-ITLKIYRTNSGEVVVKSKPEKPVKAVVSGPEVVAAPPVTGPKKQQ 181
>12_02_0438 + 19093346-19093522,19094234-19094863
Length = 268
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -2
Query: 198 SARVILSVTR---KCGSKMSIQKLQCSQ*IILCTLYIL 94
S RV+L+++R +CGS + + L C + + L Y L
Sbjct: 142 SGRVVLALSRHIDRCGSALEAELLACKEGLSLALQYTL 179
>03_06_0690 - 35571816-35572586
Length = 256
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 148 HPEVAVQPVNHSLHALH 98
HPE A+ P+NHS A H
Sbjct: 94 HPEDALDPLNHSSAAAH 110
>03_02_0878 +
12088119-12088233,12088511-12088608,12088689-12088795,
12088900-12088974,12089053-12089124,12089221-12089382,
12089476-12089550,12089635-12089706,12089813-12089884,
12090150-12090224,12090329-12090400,12090491-12090625,
12090712-12091187,12091270-12091779,12091876-12092111,
12092200-12092712
Length = 954
Score = 26.2 bits (55), Expect = 8.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 40 PASCAWVFPYLGIMQF 87
P SCA +PY G+M F
Sbjct: 425 PQSCACAYPYQGVMYF 440
>03_02_0524 - 9127695-9127991
Length = 98
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 294 VRNQRCTFTSLLRTVGSNTCWKACS 220
V+ QR F + R V CWK CS
Sbjct: 74 VKEQRARFYIMRRCVTMLVCWKDCS 98
>01_01_0136 +
1237623-1237820,1238313-1239001,1239978-1240308,
1240614-1241351
Length = 651
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = +1
Query: 229 FPTCVGSDCT*QASECAALVPNGGSSAPGVQCCR*ACALPRSSC 360
F + C+ CAA+VP G A C C P C
Sbjct: 105 FLAALAVPCSFNHKGCAAMVPYGEREAHEAACAHSPCYCPIRGC 148
>08_02_1481 - 27413397-27413414,27413738-27414367,27414471-27415484
Length = 553
Score = 23.0 bits (47), Expect(2) = 9.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 81 HDA*IWKDPCAGCRQQFTVSPSS 13
HD +W DP ++F PSS
Sbjct: 443 HDPAVWPDPNEFKPERFVAGPSS 465
Score = 21.4 bits (43), Expect(2) = 9.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -2
Query: 234 WKACSSVL*KIISARVILSVTRKCGSKMSIQKLQCSQ*IILCTLYILFVELH 79
W A VL + + ARV + R GS ++ + S+ + L + + LH
Sbjct: 354 WVAARLVLHQDVQARVHDELDRVVGSDRAVTESDASKLVYLQAVIKEVLRLH 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,366,134
Number of Sequences: 37544
Number of extensions: 259657
Number of successful extensions: 691
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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