Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D15
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical pr...    66   1e-11
Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical pr...    66   1e-11
Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical p...    47   5e-06
Z68227-7|CAA92520.1|  305|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical ...    26   7.9  
AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical ...    26   7.9  
AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine re...    26   7.9  

>Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical
           protein F17C11.9b protein.
          Length = 373

 Score = 65.7 bits (153), Expect = 1e-11
 Identities = 33/73 (45%), Positives = 45/73 (61%)
 Frame = +2

Query: 167 FLVTERITLADIIFYSTLLHAFQHVLDPTVRSKLVNVQRWFLTVGHQPQVSSVVGEPVLC 346
           +LV ER++LAD+     LL AFQ+VLD   R  +VNV RWF TV +QP V  V+GE  L 
Sbjct: 104 YLVGERLSLADVSVALDLLPAFQYVLDANARKSIVNVTRWFRTVVNQPAVKEVLGEVSLA 163

Query: 347 LAPPVFDPKKYQD 385
            +   F+  K+ +
Sbjct: 164 SSVAQFNQAKFTE 176



 Score = 30.3 bits (65), Expect = 0.49
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 19  WADSELLPASCAWVFPYLGIMQFNKQNVERAKND 120
           +A+  LLPA   +V P +    F+K+ VE+ KN+
Sbjct: 54  FAEGYLLPAVLGYVLPSVSAANFDKKTVEQYKNE 87


>Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical
           protein F17C11.9a protein.
          Length = 398

 Score = 65.7 bits (153), Expect = 1e-11
 Identities = 33/73 (45%), Positives = 45/73 (61%)
 Frame = +2

Query: 167 FLVTERITLADIIFYSTLLHAFQHVLDPTVRSKLVNVQRWFLTVGHQPQVSSVVGEPVLC 346
           +LV ER++LAD+     LL AFQ+VLD   R  +VNV RWF TV +QP V  V+GE  L 
Sbjct: 129 YLVGERLSLADVSVALDLLPAFQYVLDANARKSIVNVTRWFRTVVNQPAVKEVLGEVSLA 188

Query: 347 LAPPVFDPKKYQD 385
            +   F+  K+ +
Sbjct: 189 SSVAQFNQAKFTE 201



 Score = 30.3 bits (65), Expect = 0.49
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 19  WADSELLPASCAWVFPYLGIMQFNKQNVERAKND 120
           +A+  LLPA   +V P +    F+K+ VE+ KN+
Sbjct: 79  FAEGYLLPAVLGYVLPSVSAANFDKKTVEQYKNE 112


>Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical
           protein F17C11.9c protein.
          Length = 365

 Score = 46.8 bits (106), Expect = 5e-06
 Identities = 22/51 (43%), Positives = 30/51 (58%)
 Frame = +2

Query: 233 QHVLDPTVRSKLVNVQRWFLTVGHQPQVSSVVGEPVLCLAPPVFDPKKYQD 385
           Q+VLD   R  +VNV RWF TV +QP V  V+GE  L  +   F+  K+ +
Sbjct: 118 QYVLDANARKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTE 168



 Score = 30.3 bits (65), Expect = 0.49
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 19  WADSELLPASCAWVFPYLGIMQFNKQNVERAKND 120
           +A+  LLPA   +V P +    F+K+ VE+ KN+
Sbjct: 79  FAEGYLLPAVLGYVLPSVSAANFDKKTVEQYKNE 112


>Z68227-7|CAA92520.1|  305|Caenorhabditis elegans Hypothetical
           protein F49C12.9 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = -1

Query: 247 IQHMLESMQQRAVEDNICKSNPLRDQEVRLKDVHPEVAVQPVNHSLHALHSVC*TA*CLN 68
           ++++L ++  R   +N+  +N  R++   L    P    QPV H+L  L +    A    
Sbjct: 178 VENILSTVGSRYGYENLDYANVERNRPGMLAAQRPIGGAQPVTHAL--LQNALQAALANI 235

Query: 67  MERPMRRMPAAVHCQP 20
              P  R+PA  + QP
Sbjct: 236 AVPPANRVPAPANVQP 251


>Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 155 RCPSRSCSAASKSFFARSTFCLLNCMMPKYG 63
           RC S SCS  S      S   +LN ++P +G
Sbjct: 191 RCESSSCSGNSGISDLVSALTMLNVILPSFG 221


>Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 155 RCPSRSCSAASKSFFARSTFCLLNCMMPKYG 63
           RC S SCS  S      S   +LN ++P +G
Sbjct: 191 RCESSSCSGNSGISDLVSALTMLNVILPSFG 221


>AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 155 RCPSRSCSAASKSFFARSTFCLLNCMMPKYG 63
           RC S SCS  S      S   +LN ++P +G
Sbjct: 191 RCESSSCSGNSGISDLVSALTMLNVILPSFG 221


>AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 155 RCPSRSCSAASKSFFARSTFCLLNCMMPKYG 63
           RC S SCS  S      S   +LN ++P +G
Sbjct: 191 RCESSSCSGNSGISDLVSALTMLNVILPSFG 221


>AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine
           receptor, class v protein19 protein.
          Length = 360

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 167 FLVTERITLADIIFYSTLLHAFQHVLDPT 253
           +L    + L++++F+ TL H+F H + P+
Sbjct: 146 YLKMWELLLSNMVFFGTLKHSFYHPMYPS 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,936,342
Number of Sequences: 27780
Number of extensions: 207724
Number of successful extensions: 519
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)