Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_D14
(323 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 29 0.84
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 28 1.5
10_01_0212 - 2278447-2279580 27 2.6
05_03_0499 - 14733380-14733394,14733948-14733975,14735286-14736268 27 3.4
01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436 27 3.4
05_03_0592 + 15909437-15911002 27 4.5
03_05_0101 - 20803546-20803800,20803907-20804700,20804788-208050... 27 4.5
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 26 5.9
04_03_0649 - 18402976-18403220,18403305-18404499 26 7.8
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 26 7.8
01_06_0117 + 26605186-26605443,26605540-26605583,26605659-266057... 26 7.8
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 29.1 bits (62), Expect = 0.84
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 15 LVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAK 170
LV+G + T L E+SG+P D GP K+ L++ E+ K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 297 KKPRSHLHHYHQEGGRHR 244
++P+SH HH+H G R R
Sbjct: 164 QQPQSHHHHHHHSGSRKR 181
>10_01_0212 - 2278447-2279580
Length = 377
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = +3
Query: 201 PHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEGS*HGR 320
P R V DP FRL EGG W Y G HGR
Sbjct: 83 PFFRSVLDPPDLIPRECFRLRLAEDEGGQWHFY-GCRHGR 121
>05_03_0499 - 14733380-14733394,14733948-14733975,14735286-14736268
Length = 341
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = +3
Query: 201 PHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEGS*HGR 320
P R V DP FRL EGG W Y G HGR
Sbjct: 82 PFFRSVLDPPDLIPRERFRLRLAEDEGGQWRFY-GCRHGR 120
>01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436
Length = 86
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 168 KLINPNQNGKRPHLRK 215
K I PN++GK PH+RK
Sbjct: 15 KTIPPNRHGKAPHVRK 30
>05_03_0592 + 15909437-15911002
Length = 521
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 39 GRTWKLDSDSEISGVPPIHADEGGEAGP 122
G +L+ +GVPP+ +EGGE P
Sbjct: 17 GELVELELGERNNGVPPVAEEEGGEPRP 44
>03_05_0101 -
20803546-20803800,20803907-20804700,20804788-20805042,
20805143-20805263,20805716-20805768,20805979-20806239,
20806734-20806784,20806900-20807148,20807257-20807479,
20807737-20807910
Length = 811
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +3
Query: 90 IHADEGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSK 233
+HA++ G+ G + + Y ++C + PNQ + + + ND K
Sbjct: 125 LHANDDGDGGTFALYSLISRYAKVC---LIPNQQAEDELVTRYNDHGK 169
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 294 KPRSHLHHYHQEGGRHR 244
KPR HH+HQ+ G R
Sbjct: 57 KPRRRRHHHHQQAGMAR 73
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 12 KLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEI 161
K+V+GI GR+W L + + P+ A + G + G +SY E+
Sbjct: 277 KVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRG--SNATGAMSYAEV 324
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 123 KDQLHHPHRRVSVELRKFHCLNRA 52
K+ L ++V +++RK +C+NRA
Sbjct: 168 KEPLKATTQQVEIQVRKIYCINRA 191
>01_06_0117 +
26605186-26605443,26605540-26605583,26605659-26605737,
26605822-26605944,26606300-26606482,26606562-26606648,
26608149-26608255,26608387-26608474,26608805-26608885,
26608983-26609059,26609183-26609318,26609548-26609610,
26609983-26610563,26610816-26610933
Length = 674
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 42 RTWKLDSDSEISGVPPIHADEGGEAGP 122
R ++ ++ S S P+ ADEG AGP
Sbjct: 36 RGFRAEASSSASTPAPVAADEGAGAGP 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,179,216
Number of Sequences: 37544
Number of extensions: 213752
Number of successful extensions: 690
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -