Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_D14
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81516-1|CAB04203.1|  521|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    26   5.4  
AL024499-5|CAC42318.1|  562|Caenorhabditis elegans Hypothetical ...    26   7.2  
AL024499-4|CAC42317.1|  617|Caenorhabditis elegans Hypothetical ...    26   7.2  
AL024499-3|CAA19707.1|  618|Caenorhabditis elegans Hypothetical ...    26   7.2  
AF031840-1|AAC13676.1|  562|Caenorhabditis elegans GLY6c protein.      26   7.2  
AF031839-1|AAC13675.1|  617|Caenorhabditis elegans GLY6b protein.      26   7.2  
AF031838-1|AAC13674.1|  618|Caenorhabditis elegans GLY6a protein.      26   7.2  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    26   7.2  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical...    25   9.5  
AL021176-3|CAA15976.2|  316|Caenorhabditis elegans Hypothetical ...    25   9.5  
AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical ...    25   9.5  
AC006666-2|AAK21416.2|  244|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z81516-1|CAB04203.1|  521|Caenorhabditis elegans Hypothetical
           protein F26H9.2 protein.
          Length = 521

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +3

Query: 57  DSDSEISGVPPIH--ADEGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPS 230
           D  +E  G   ++  AD  GE  P T       Y  I AK  N      +P+LR+   PS
Sbjct: 216 DQSTESEGEEDMNRSADRRGELSPQTSRMLKEGYRRIEAKEPNFTAQPDKPNLRRPGQPS 275

Query: 231 K 233
           +
Sbjct: 276 R 276


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 294 KPRSHLHHYHQEGGRHRSQNVC*DR*PYEDEDAFRF 187
           +PR    H+HQE  RHR+ +   D  P    +  RF
Sbjct: 200 RPRHRSSHHHQEPRRHRAPSPDPDYSPPLSRNKVRF 235


>AL024499-5|CAC42318.1|  562|Caenorhabditis elegans Hypothetical
           protein H38K22.5c protein.
          Length = 562

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 189 NGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSY 299
           NG  P  +K N  S+      +   DD GEGG  VS+
Sbjct: 71  NGNLPEDKKRNLTSEELNANLYAPHDDWGEGGAGVSH 107


>AL024499-4|CAC42317.1|  617|Caenorhabditis elegans Hypothetical
           protein H38K22.5b protein.
          Length = 617

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 189 NGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSY 299
           NG  P  +K N  S+      +   DD GEGG  VS+
Sbjct: 71  NGNLPEDKKRNLTSEELNANLYAPHDDWGEGGAGVSH 107


>AL024499-3|CAA19707.1|  618|Caenorhabditis elegans Hypothetical
           protein H38K22.5a protein.
          Length = 618

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 189 NGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSY 299
           NG  P  +K N  S+      +   DD GEGG  VS+
Sbjct: 71  NGNLPEDKKRNLTSEELNANLYAPHDDWGEGGAGVSH 107


>AF031840-1|AAC13676.1|  562|Caenorhabditis elegans GLY6c protein.
          Length = 562

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 189 NGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSY 299
           NG  P  +K N  S+      +   DD GEGG  VS+
Sbjct: 71  NGNLPEDKKRNLTSEELNANLYAPHDDWGEGGAGVSH 107


>AF031839-1|AAC13675.1|  617|Caenorhabditis elegans GLY6b protein.
          Length = 617

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 189 NGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSY 299
           NG  P  +K N  S+      +   DD GEGG  VS+
Sbjct: 71  NGNLPEDKKRNLTSEELNANLYAPHDDWGEGGAGVSH 107


>AF031838-1|AAC13674.1|  618|Caenorhabditis elegans GLY6a protein.
          Length = 618

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 189 NGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSY 299
           NG  P  +K N  S+      +   DD GEGG  VS+
Sbjct: 71  NGNLPEDKKRNLTSEELNANLYAPHDDWGEGGAGVSH 107


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
           protein 4 protein.
          Length = 2325

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 6   RHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQG 140
           R++L+L   TT   W +     + G PPI  D GG       V+G
Sbjct: 2   RNRLLLIFYTTTVLWTIGYTQLVLGKPPIFQD-GGSVEQKVAVEG 45


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 282 HLHHYHQEGGRHR 244
           H+HHYHQ+   H+
Sbjct: 960 HVHHYHQDENAHQ 972


>AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical
           protein Y51H4A.13 protein.
          Length = 591

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 117 QLHHPHRRVSVELRKFH 67
           QLHH HRR     R+FH
Sbjct: 310 QLHHQHRRRYSSPRRFH 326


>AL021176-3|CAA15976.2|  316|Caenorhabditis elegans Hypothetical
           protein Y43E12A.3 protein.
          Length = 316

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 46  RGSSIQTVKFPEFHRYTPMRVVKL 117
           +G S+ ++KFP+FH +     +KL
Sbjct: 20  KGLSLDSIKFPDFHMFDTNWKMKL 43


>AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical
           protein Y24D9B.1 protein.
          Length = 550

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 117 QLHHPHRRVSVELRKFH 67
           QLHH HRR     R+FH
Sbjct: 310 QLHHQHRRRYSSPRRFH 326


>AC006666-2|AAK21416.2|  244|Caenorhabditis elegans Hypothetical
           protein H31G24.3 protein.
          Length = 244

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 46  RGSSIQTVKFPEFHRYTPMRVVKL 117
           +G S+ ++KFP+FH +     +KL
Sbjct: 18  KGLSLDSIKFPDFHMFDTNWKMKL 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,254,777
Number of Sequences: 27780
Number of extensions: 172592
Number of successful extensions: 496
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)